Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.75■□□□□ 0.75
SHOX2O60902 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SHOX2O60902 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHOX2O60902 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.75■□□□□ 0.75
SHOX2O60902 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SHOX2O60902 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHOX2O60902 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHOX2O60902 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.75■□□□□ 0.75
SHOX2O60902 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHOX2O60902 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHOX2O60902 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHOX2O60902 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.74■□□□□ 0.75
SHOX2O60902 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHOX2O60902 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHOX2O60902 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
SHOX2O60902 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.74■□□□□ 0.75
SHOX2O60902 AL512631.2-201ENST00000604634 923 ntBASIC19.74■□□□□ 0.75
SHOX2O60902 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHOX2O60902 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHOX2O60902 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.74■□□□□ 0.75
SHOX2O60902 AC012313.1-201ENST00000593393 3059 ntBASIC19.74■□□□□ 0.75
SHOX2O60902 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.74■□□□□ 0.75
SHOX2O60902 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHOX2O60902 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SHOX2O60902 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.73■□□□□ 0.75
SHOX2O60902 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 ABALON-201ENST00000629058 1903 ntBASIC19.73■□□□□ 0.75
SHOX2O60902 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.73■□□□□ 0.75
SHOX2O60902 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SHOX2O60902 AC141586.3-201ENST00000562166 1838 ntBASIC19.73■□□□□ 0.75
SHOX2O60902 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.73■□□□□ 0.75
SHOX2O60902 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.73■□□□□ 0.75
SHOX2O60902 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SHOX2O60902 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SHOX2O60902 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SHOX2O60902 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHOX2O60902 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHOX2O60902 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHOX2O60902 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHOX2O60902 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHOX2O60902 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.72■□□□□ 0.75
SHOX2O60902 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.72■□□□□ 0.75
SHOX2O60902 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.72■□□□□ 0.75
SHOX2O60902 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHOX2O60902 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SHOX2O60902 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SHOX2O60902 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHOX2O60902 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SHOX2O60902 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHOX2O60902 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.72■□□□□ 0.75
SHOX2O60902 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.72■□□□□ 0.75
SHOX2O60902 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.72■□□□□ 0.75
SHOX2O60902 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.72■□□□□ 0.75
SHOX2O60902 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHOX2O60902 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHOX2O60902 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.71■□□□□ 0.75
SHOX2O60902 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.71■□□□□ 0.75
SHOX2O60902 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHOX2O60902 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHOX2O60902 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHOX2O60902 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.71■□□□□ 0.75
SHOX2O60902 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.71■□□□□ 0.75
SHOX2O60902 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHOX2O60902 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
SHOX2O60902 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHOX2O60902 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.71■□□□□ 0.75
SHOX2O60902 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.71■□□□□ 0.75
SHOX2O60902 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.71■□□□□ 0.75
SHOX2O60902 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.71■□□□□ 0.75
SHOX2O60902 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.71■□□□□ 0.75
SHOX2O60902 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.71■□□□□ 0.75
SHOX2O60902 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.71■□□□□ 0.75
SHOX2O60902 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SHOX2O60902 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.71■□□□□ 0.75
SHOX2O60902 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHOX2O60902 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHOX2O60902 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHOX2O60902 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHOX2O60902 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHOX2O60902 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHOX2O60902 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHOX2O60902 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHOX2O60902 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms