Protein–RNA interactions for Protein: O15516

CLOCK, Circadian locomoter output cycles protein kaput, humanhuman

Predictions only

Length 846 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLOCKO15516 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.68■□□□□ 0.58
CLOCKO15516 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.68■□□□□ 0.58
CLOCKO15516 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
CLOCKO15516 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.68■□□□□ 0.58
CLOCKO15516 KRT19P1-201ENST00000405746 1186 ntBASIC18.68■□□□□ 0.58
CLOCKO15516 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.68■□□□□ 0.58
CLOCKO15516 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLOCKO15516 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.68■□□□□ 0.58
CLOCKO15516 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLOCKO15516 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLOCKO15516 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.68■□□□□ 0.58
CLOCKO15516 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.68■□□□□ 0.58
CLOCKO15516 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
CLOCKO15516 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CLOCKO15516 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLOCKO15516 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLOCKO15516 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLOCKO15516 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLOCKO15516 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLOCKO15516 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLOCKO15516 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLOCKO15516 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLOCKO15516 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.67■□□□□ 0.58
CLOCKO15516 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLOCKO15516 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLOCKO15516 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLOCKO15516 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLOCKO15516 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLOCKO15516 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLOCKO15516 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.67■□□□□ 0.58
CLOCKO15516 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.67■□□□□ 0.58
CLOCKO15516 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.67■□□□□ 0.58
CLOCKO15516 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLOCKO15516 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLOCKO15516 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.67■□□□□ 0.58
CLOCKO15516 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.67■□□□□ 0.58
CLOCKO15516 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.67■□□□□ 0.58
CLOCKO15516 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CLOCKO15516 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLOCKO15516 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLOCKO15516 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLOCKO15516 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.67■□□□□ 0.58
CLOCKO15516 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLOCKO15516 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLOCKO15516 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLOCKO15516 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLOCKO15516 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLOCKO15516 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CLOCKO15516 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
CLOCKO15516 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLOCKO15516 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLOCKO15516 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLOCKO15516 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLOCKO15516 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLOCKO15516 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.66■□□□□ 0.58
CLOCKO15516 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLOCKO15516 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.66■□□□□ 0.58
CLOCKO15516 AC080038.1-201ENST00000611274 1154 ntBASIC18.66■□□□□ 0.58
CLOCKO15516 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.66■□□□□ 0.58
CLOCKO15516 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CLOCKO15516 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLOCKO15516 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLOCKO15516 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.66■□□□□ 0.58
CLOCKO15516 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CLOCKO15516 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.66■□□□□ 0.58
CLOCKO15516 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.66■□□□□ 0.58
CLOCKO15516 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.66■□□□□ 0.58
CLOCKO15516 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.66■□□□□ 0.58
CLOCKO15516 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.66■□□□□ 0.58
CLOCKO15516 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLOCKO15516 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CLOCKO15516 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.65■□□□□ 0.58
CLOCKO15516 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CLOCKO15516 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 AC138907.5-202ENST00000569484 235 ntBASIC18.65■□□□□ 0.58
CLOCKO15516 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.65■□□□□ 0.58
CLOCKO15516 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CLOCKO15516 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.65■□□□□ 0.58
CLOCKO15516 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLOCKO15516 AC090340.1-201ENST00000620778 4980 ntBASIC18.64■□□□□ 0.58
CLOCKO15516 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CLOCKO15516 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CLOCKO15516 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
CLOCKO15516 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.64■□□□□ 0.57
CLOCKO15516 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CLOCKO15516 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms