Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LBX2-AS1-202ENST00000603175 2083 ntBASIC22.21■■□□□ 1.15
MSH4O15457 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH4O15457 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH4O15457 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
MSH4O15457 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC22.2■■□□□ 1.15
MSH4O15457 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
MSH4O15457 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH4O15457 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH4O15457 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH4O15457 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH4O15457 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
MSH4O15457 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH4O15457 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC22.2■■□□□ 1.14
MSH4O15457 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH4O15457 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH4O15457 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH4O15457 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC22.2■■□□□ 1.14
MSH4O15457 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC22.2■■□□□ 1.14
MSH4O15457 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH4O15457 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH4O15457 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC22.2■■□□□ 1.14
MSH4O15457 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH4O15457 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH4O15457 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC22.19■■□□□ 1.14
MSH4O15457 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH4O15457 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH4O15457 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH4O15457 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
MSH4O15457 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC22.19■■□□□ 1.14
MSH4O15457 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
MSH4O15457 KRT18P16-201ENST00000510337 1294 ntBASIC22.19■■□□□ 1.14
MSH4O15457 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC22.19■■□□□ 1.14
MSH4O15457 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC22.19■■□□□ 1.14
MSH4O15457 RARRES2P10-201ENST00000564312 460 ntBASIC22.19■■□□□ 1.14
MSH4O15457 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC22.19■■□□□ 1.14
MSH4O15457 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH4O15457 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC22.19■■□□□ 1.14
MSH4O15457 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH4O15457 TMEM179-206ENST00000616017 1645 ntBASIC22.19■■□□□ 1.14
MSH4O15457 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC22.19■■□□□ 1.14
MSH4O15457 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH4O15457 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC22.19■■□□□ 1.14
MSH4O15457 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH4O15457 PCDHAC2-203ENST00000615316 3011 ntBASIC22.18■■□□□ 1.14
MSH4O15457 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC22.18■■□□□ 1.14
MSH4O15457 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH4O15457 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH4O15457 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
MSH4O15457 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MSH4O15457 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC22.18■■□□□ 1.14
MSH4O15457 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH4O15457 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MSH4O15457 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH4O15457 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH4O15457 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH4O15457 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MSH4O15457 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MSH4O15457 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MSH4O15457 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
MSH4O15457 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC22.18■■□□□ 1.14
MSH4O15457 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH4O15457 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH4O15457 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH4O15457 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC22.17■■□□□ 1.14
MSH4O15457 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH4O15457 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
MSH4O15457 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
MSH4O15457 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC22.17■■□□□ 1.14
MSH4O15457 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH4O15457 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
MSH4O15457 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC22.17■■□□□ 1.14
MSH4O15457 HTR7P1-201ENST00000538670 1336 ntBASIC22.17■■□□□ 1.14
MSH4O15457 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
MSH4O15457 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH4O15457 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC22.17■■□□□ 1.14
MSH4O15457 RPS2P4-201ENST00000476944 856 ntBASIC22.17■■□□□ 1.14
MSH4O15457 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH4O15457 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC22.17■■□□□ 1.14
MSH4O15457 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC22.17■■□□□ 1.14
MSH4O15457 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH4O15457 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC22.17■■□□□ 1.14
MSH4O15457 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH4O15457 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH4O15457 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH4O15457 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH4O15457 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH4O15457 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
MSH4O15457 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC22.17■■□□□ 1.14
MSH4O15457 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC22.16■■□□□ 1.14
MSH4O15457 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
MSH4O15457 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC22.16■■□□□ 1.14
MSH4O15457 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH4O15457 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH4O15457 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
MSH4O15457 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
MSH4O15457 RPS2P55-201ENST00000397318 883 ntBASIC22.16■■□□□ 1.14
MSH4O15457 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC22.16■■□□□ 1.14
MSH4O15457 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
MSH4O15457 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC22.16■■□□□ 1.14
MSH4O15457 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms