Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.18■□□□□ 0.66
HDAC3O15379 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.18■□□□□ 0.66
HDAC3O15379 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.18■□□□□ 0.66
HDAC3O15379 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.18■□□□□ 0.66
HDAC3O15379 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
HDAC3O15379 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
HDAC3O15379 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC3O15379 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
HDAC3O15379 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
HDAC3O15379 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.17■□□□□ 0.66
HDAC3O15379 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
HDAC3O15379 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
HDAC3O15379 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.17■□□□□ 0.66
HDAC3O15379 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.17■□□□□ 0.66
HDAC3O15379 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 AC007322.4-201ENST00000509611 723 ntBASIC19.17■□□□□ 0.66
HDAC3O15379 AC100791.3-201ENST00000617619 330 ntBASIC19.17■□□□□ 0.66
HDAC3O15379 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.17■□□□□ 0.66
HDAC3O15379 PHGDH-210ENST00000641115 1638 ntBASIC19.17■□□□□ 0.66
HDAC3O15379 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.17■□□□□ 0.66
HDAC3O15379 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.17■□□□□ 0.66
HDAC3O15379 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
HDAC3O15379 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC3O15379 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.16■□□□□ 0.66
HDAC3O15379 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
HDAC3O15379 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC3O15379 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC3O15379 NEFHP1-201ENST00000412845 2629 ntBASIC19.16■□□□□ 0.66
HDAC3O15379 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC3O15379 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.16■□□□□ 0.66
HDAC3O15379 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC3O15379 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.16■□□□□ 0.66
HDAC3O15379 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC3O15379 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC3O15379 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC3O15379 HLA-G-202ENST00000376815 851 ntBASIC19.16■□□□□ 0.66
HDAC3O15379 HLA-G-203ENST00000376818 1127 ntBASIC19.16■□□□□ 0.66
HDAC3O15379 MCRIP2P1-201ENST00000394346 511 ntBASIC19.16■□□□□ 0.66
HDAC3O15379 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.16■□□□□ 0.66
HDAC3O15379 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
HDAC3O15379 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.16■□□□□ 0.66
HDAC3O15379 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC3O15379 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
HDAC3O15379 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC3O15379 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC3O15379 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
HDAC3O15379 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC3O15379 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC3O15379 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.15■□□□□ 0.66
HDAC3O15379 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
HDAC3O15379 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC3O15379 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.15■□□□□ 0.66
HDAC3O15379 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.15■□□□□ 0.66
HDAC3O15379 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC3O15379 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HDAC3O15379 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
HDAC3O15379 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC3O15379 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC3O15379 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
HDAC3O15379 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.15■□□□□ 0.66
HDAC3O15379 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HDAC3O15379 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
HDAC3O15379 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HDAC3O15379 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
HDAC3O15379 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.66
HDAC3O15379 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDAC3O15379 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms