Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC16.75■□□□□ 0.27
SDCBPO00560 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
SDCBPO00560 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SDCBPO00560 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDCBPO00560 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SDCBPO00560 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
SDCBPO00560 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDCBPO00560 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC16.74■□□□□ 0.27
SDCBPO00560 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC16.74■□□□□ 0.27
SDCBPO00560 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDCBPO00560 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDCBPO00560 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
SDCBPO00560 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC16.74■□□□□ 0.27
SDCBPO00560 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC16.74■□□□□ 0.27
SDCBPO00560 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SDCBPO00560 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDCBPO00560 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC16.74■□□□□ 0.27
SDCBPO00560 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC16.74■□□□□ 0.27
SDCBPO00560 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC16.74■□□□□ 0.27
SDCBPO00560 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC16.74■□□□□ 0.27
SDCBPO00560 AC006015.1-201ENST00000429970 570 ntBASIC16.74■□□□□ 0.27
SDCBPO00560 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC16.74■□□□□ 0.27
SDCBPO00560 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC16.74■□□□□ 0.27
SDCBPO00560 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC16.74■□□□□ 0.27
SDCBPO00560 AL162412.1-201ENST00000567129 965 ntBASIC16.74■□□□□ 0.27
SDCBPO00560 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SDCBPO00560 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC16.74■□□□□ 0.27
SDCBPO00560 AC011767.1-201ENST00000617410 1153 ntBASIC16.74■□□□□ 0.27
SDCBPO00560 BID-214ENST00000617586 542 ntTSL 5 BASIC16.74■□□□□ 0.27
SDCBPO00560 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
SDCBPO00560 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SDCBPO00560 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC16.74■□□□□ 0.27
SDCBPO00560 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SDCBPO00560 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.74■□□□□ 0.27
SDCBPO00560 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC16.74■□□□□ 0.27
SDCBPO00560 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SDCBPO00560 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SDCBPO00560 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDCBPO00560 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDCBPO00560 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC16.73■□□□□ 0.27
SDCBPO00560 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
SDCBPO00560 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC16.73■□□□□ 0.27
SDCBPO00560 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
SDCBPO00560 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.73■□□□□ 0.27
SDCBPO00560 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
SDCBPO00560 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC16.73■□□□□ 0.27
SDCBPO00560 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC16.73■□□□□ 0.27
SDCBPO00560 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC16.73■□□□□ 0.27
SDCBPO00560 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC16.73■□□□□ 0.27
SDCBPO00560 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
SDCBPO00560 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
SDCBPO00560 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC16.73■□□□□ 0.27
SDCBPO00560 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
SDCBPO00560 Z82202.1-201ENST00000623446 1880 ntBASIC16.73■□□□□ 0.27
SDCBPO00560 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
SDCBPO00560 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
SDCBPO00560 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDCBPO00560 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
SDCBPO00560 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.72■□□□□ 0.27
SDCBPO00560 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
SDCBPO00560 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 PTGES2-AS1-201ENST00000443493 2100 ntBASIC16.72■□□□□ 0.27
SDCBPO00560 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.72■□□□□ 0.27
SDCBPO00560 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
SDCBPO00560 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.72■□□□□ 0.27
SDCBPO00560 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 ME3-201ENST00000323418 1068 ntTSL 5 BASIC16.72■□□□□ 0.27
SDCBPO00560 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC16.72■□□□□ 0.27
SDCBPO00560 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC16.72■□□□□ 0.27
SDCBPO00560 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC16.72■□□□□ 0.27
SDCBPO00560 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC16.72■□□□□ 0.27
SDCBPO00560 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms