Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1AO00555 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CACNA1AO00555 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.72■□□□□ 0.59
CACNA1AO00555 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
CACNA1AO00555 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.72■□□□□ 0.59
CACNA1AO00555 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.72■□□□□ 0.59
CACNA1AO00555 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC18.72■□□□□ 0.59
CACNA1AO00555 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1AO00555 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1AO00555 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CACNA1AO00555 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1AO00555 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1AO00555 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1AO00555 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.71■□□□□ 0.59
CACNA1AO00555 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.71■□□□□ 0.59
CACNA1AO00555 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1AO00555 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1AO00555 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.71■□□□□ 0.59
CACNA1AO00555 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.71■□□□□ 0.59
CACNA1AO00555 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC18.71■□□□□ 0.59
CACNA1AO00555 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CACNA1AO00555 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1AO00555 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1AO00555 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1AO00555 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1AO00555 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.71■□□□□ 0.59
CACNA1AO00555 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.71■□□□□ 0.59
CACNA1AO00555 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.71■□□□□ 0.59
CACNA1AO00555 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CACNA1AO00555 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
CACNA1AO00555 AC064862.7-201ENST00000604520 867 ntBASIC18.71■□□□□ 0.59
CACNA1AO00555 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.71■□□□□ 0.59
CACNA1AO00555 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1AO00555 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1AO00555 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1AO00555 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.7■□□□□ 0.58
CACNA1AO00555 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1AO00555 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1AO00555 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1AO00555 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.7■□□□□ 0.58
CACNA1AO00555 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.7■□□□□ 0.58
CACNA1AO00555 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.7■□□□□ 0.58
CACNA1AO00555 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.7■□□□□ 0.58
CACNA1AO00555 AP006587.1-201ENST00000534129 1502 ntBASIC18.7■□□□□ 0.58
CACNA1AO00555 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1AO00555 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.7■□□□□ 0.58
CACNA1AO00555 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1AO00555 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CACNA1AO00555 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.7■□□□□ 0.58
CACNA1AO00555 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.7■□□□□ 0.58
CACNA1AO00555 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1AO00555 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CACNA1AO00555 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CACNA1AO00555 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
CACNA1AO00555 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.69■□□□□ 0.58
CACNA1AO00555 HLA-G-202ENST00000376815 851 ntBASIC18.69■□□□□ 0.58
CACNA1AO00555 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CACNA1AO00555 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.69■□□□□ 0.58
CACNA1AO00555 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.69■□□□□ 0.58
CACNA1AO00555 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.69■□□□□ 0.58
CACNA1AO00555 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.69■□□□□ 0.58
CACNA1AO00555 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.69■□□□□ 0.58
CACNA1AO00555 KRT18P67-201ENST00000432816 1264 ntBASIC18.69■□□□□ 0.58
CACNA1AO00555 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.69■□□□□ 0.58
CACNA1AO00555 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.69■□□□□ 0.58
CACNA1AO00555 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CACNA1AO00555 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.69■□□□□ 0.58
CACNA1AO00555 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1AO00555 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC18.69■□□□□ 0.58
CACNA1AO00555 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CACNA1AO00555 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1AO00555 FAM8A3P-201ENST00000427218 844 ntBASIC18.68■□□□□ 0.58
CACNA1AO00555 AC092597.1-201ENST00000487352 616 ntBASIC18.68■□□□□ 0.58
CACNA1AO00555 RNPS1P1-201ENST00000507437 918 ntBASIC18.68■□□□□ 0.58
CACNA1AO00555 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.68■□□□□ 0.58
CACNA1AO00555 AP002414.4-201ENST00000589764 1148 ntBASIC18.68■□□□□ 0.58
CACNA1AO00555 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
CACNA1AO00555 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1AO00555 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1AO00555 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.68■□□□□ 0.58
CACNA1AO00555 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1AO00555 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1AO00555 DRAXINP1-201ENST00000437611 948 ntBASIC18.68■□□□□ 0.58
CACNA1AO00555 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms