Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 GUSBP5-201ENST00000418136 578 ntBASIC14.39□□□□□ -0.11
SMKR1H3BMG3 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SMKR1H3BMG3 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 KRT16P2-201ENST00000414673 1423 ntBASIC14.38□□□□□ -0.11
SMKR1H3BMG3 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
SMKR1H3BMG3 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 GOLGA2P11-201ENST00000562660 1621 ntBASIC14.37□□□□□ -0.11
SMKR1H3BMG3 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 AC008764.7-201ENST00000593779 1081 ntBASIC14.37□□□□□ -0.11
SMKR1H3BMG3 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 AC009113.1-201ENST00000570267 2443 ntBASIC14.37□□□□□ -0.11
SMKR1H3BMG3 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms