Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RPL35AP19-201ENST00000469425 329 ntBASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 RN7SL583P-201ENST00000475692 287 ntBASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 AL035690.1-201ENST00000490892 383 ntBASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 CASC22-202ENST00000628396 802 ntTSL 5 BASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 AC006511.3-201ENST00000624929 1783 ntBASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 SELENOWP1-201ENST00000322792 252 ntBASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 RNA5SP131-201ENST00000365452 119 ntBASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 OR7E116P-201ENST00000448529 957 ntBASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 AC244502.2-201ENST00000543361 851 ntBASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 AL049539.1-201ENST00000611964 459 ntBASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 AL390318.1-201ENST00000624564 687 ntBASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 OR11H2-202ENST00000641517 1085 ntBASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 AC087269.2-201ENST00000641764 975 ntBASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC7.2□□□□□ -1.26
CCDC88AQ3V6T2 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 AZGP1P2-201ENST00000454506 345 ntBASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 TXNP4-201ENST00000575018 310 ntBASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 AC027334.1-201ENST00000603257 310 ntBASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 USP9YP3-201ENST00000434481 1766 ntBASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 TEK-204ENST00000519097 3836 ntTSL 2 BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 RPL37P18-201ENST00000411602 243 ntBASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 MYL6P5-201ENST00000412707 459 ntBASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 PTCD2P2-201ENST00000415579 1095 ntBASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 OR52B5P-201ENST00000435337 951 ntBASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 RPL21P133-201ENST00000443666 476 ntBASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 CT45A11P-201ENST00000448043 1134 ntBASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 AC099521.1-201ENST00000482557 334 ntBASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 AC083795.1-201ENST00000491760 320 ntBASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 IGLCOR22-2-201ENST00000605398 313 ntBASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 OR52B5P-202ENST00000641118 1110 ntBASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
CCDC88AQ3V6T2 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 MIR141-201ENST00000384975 95 ntBASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 AP003170.5-201ENST00000397185 335 ntBASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 RPL23AP27-201ENST00000415161 451 ntBASIC7.18□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms