RNA–Protein interactions for RNA: ENST00000560508.1

AP4E1-203, Transcript of adaptor related protein complex 4 subunit epsilon 1, humanhuman

TSL 1 (best) BASIC

Gene AP4E1, Length 6,653 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1-203ENST00000560508 NISCHQ9Y2I1 1504 aa12.31□□□□□ -0.44
AP4E1-203ENST00000560508 DCAF8L2P0C7V8 631 aa11.99□□□□□ -0.49
AP4E1-203ENST00000560508 SUPT5HO00267 1087 aaKnown RBP11.47□□□□□ -0.57
AP4E1-203ENST00000560508 SHROOM4Q9ULL8 1493 aa11.43□□□□□ -0.58
AP4E1-203ENST00000560508 EHMT2Q96KQ7 1210 aa10.94□□□□□ -0.66
AP4E1-203ENST00000560508 APLP2Q06481 763 aa10.86□□□□□ -0.67
AP4E1-203ENST00000560508 FAM9AQ8IZU1 332 aaPredicted RBP10.76□□□□□ -0.69
AP4E1-203ENST00000560508 TRIM41Q8WV44 630 aa10.72□□□□□ -0.69
AP4E1-203ENST00000560508 PELP1Q8IZL8 1130 aaKnown RBP10.69□□□□□ -0.7
AP4E1-203ENST00000560508 PCGF6Q9BYE7 350 aa10.67□□□□□ -0.7
AP4E1-203ENST00000560508 ZEB1P37275 1124 aaPredicted RBP10.63□□□□□ -0.71
AP4E1-203ENST00000560508 TTBK1Q5TCY1 1321 aaPredicted RBP10.59□□□□□ -0.71
AP4E1-203ENST00000560508 UBTFP17480 764 aaKnown RBP10.52□□□□□ -0.73
AP4E1-203ENST00000560508 RANGAP1P46060 587 aaPredicted RBP10.51□□□□□ -0.73
AP4E1-203ENST00000560508 CCER1Q8TC90 406 aaPredicted RBP10.5□□□□□ -0.73
AP4E1-203ENST00000560508 ATP1B4Q9UN42 357 aaPredicted RBP10.45□□□□□ -0.74
AP4E1-203ENST00000560508 CCDC180Q9P1Z9 1646 aa10.44□□□□□ -0.74
AP4E1-203ENST00000560508 CENPBP07199 599 aaPredicted RBP10.42□□□□□ -0.74
AP4E1-203ENST00000560508 TRIM26Q12899 539 aaPredicted RBP10.39□□□□□ -0.75
AP4E1-203ENST00000560508 ABCC9O60706 1549 aa10.36□□□□□ -0.75
AP4E1-203ENST00000560508 CHIC1Q5VXU3 224 aa10.34□□□□□ -0.75
AP4E1-203ENST00000560508 PPARGC1BQ86YN6 1023 aaKnown RBP10.27□□□□□ -0.77
AP4E1-203ENST00000560508 ZCCHC6Q5VYS8 1495 aaKnown RBP10.25□□□□□ -0.77
AP4E1-203ENST00000560508 LOC105371045A0A1W2PR82 267 aa10.24□□□□□ -0.77
AP4E1-203ENST00000560508 HRCP23327 699 aa10.23□□□□□ -0.77
AP4E1-203ENST00000560508 SCRIBQ14160 1630 aa10.22□□□□□ -0.77
AP4E1-203ENST00000560508 ERICH6Q7L0X2 663 aa10.19□□□□□ -0.78
AP4E1-203ENST00000560508 NEFLP07196 543 aa10.16□□□□□ -0.78
AP4E1-203ENST00000560508 YTHDC1Q96MU7 727 aaKnown RBP10.14□□□□□ -0.79
AP4E1-203ENST00000560508 PABPN1Q86U42 306 aaKnown RBP eCLIP10.14□□□□□ -0.79
AP4E1-203ENST00000560508 ITGAEP38570 1179 aa10.1□□□□□ -0.79
AP4E1-203ENST00000560508 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.09□□□□□ -0.79
AP4E1-203ENST00000560508 HNRNPUL2Q1KMD3 747 aaKnown RBP10.09□□□□□ -0.79
AP4E1-203ENST00000560508 RB1CC1Q8TDY2 1594 aa10.01□□□□□ -0.81
AP4E1-203ENST00000560508 MYT1LQ9UL68 1186 aa10□□□□□ -0.81
AP4E1-203ENST00000560508 FAM50AQ14320 339 aaKnown RBP9.96□□□□□ -0.82
AP4E1-203ENST00000560508 MYT1Q01538 1121 aa9.95□□□□□ -0.82
AP4E1-203ENST00000560508 NACADO15069 1562 aa9.94□□□□□ -0.82
AP4E1-203ENST00000560508 POLR3GLQ9BT43 218 aa9.93□□□□□ -0.82
AP4E1-203ENST00000560508 DIEXFQ68CQ4 756 aaKnown RBP9.92□□□□□ -0.82
AP4E1-203ENST00000560508 DCAF1Q9Y4B6 1507 aa9.91□□□□□ -0.82
AP4E1-203ENST00000560508 CSRNP3Q8WYN3 585 aa9.87□□□□□ -0.83
AP4E1-203ENST00000560508 TRIM52Q96A61 297 aa9.86□□□□□ -0.83
AP4E1-203ENST00000560508 NEUROD1Q13562 356 aa9.82□□□□□ -0.84
AP4E1-203ENST00000560508 DAXXQ9UER7 740 aaPredicted RBP9.8□□□□□ -0.84
AP4E1-203ENST00000560508 ZNF316A6NFI3 1004 aaPredicted RBP9.76□□□□□ -0.85
AP4E1-203ENST00000560508 CNGB1Q14028 1251 aaPredicted RBP9.76□□□□□ -0.85
AP4E1-203ENST00000560508 SLC4A1APQ9BWU0 796 aaKnown RBP9.75□□□□□ -0.85
AP4E1-203ENST00000560508 FBLN2P98095 1184 aa9.75□□□□□ -0.85
AP4E1-203ENST00000560508 ANP32CO43423 234 aa9.75□□□□□ -0.85
AP4E1-203ENST00000560508 RSF1Q96T23 1441 aaPredicted RBP9.74□□□□□ -0.85
AP4E1-203ENST00000560508 P3H3Q8IVL6 736 aa9.73□□□□□ -0.85
AP4E1-203ENST00000560508 BAZ1AQ9NRL2 1556 aaPredicted RBP9.71□□□□□ -0.85
AP4E1-203ENST00000560508 EEA1Q15075 1411 aa9.7□□□□□ -0.86
AP4E1-203ENST00000560508 MYO15BQ96JP2 1530 aa9.7□□□□□ -0.86
AP4E1-203ENST00000560508 BAZ1BQ9UIG0 1483 aaKnown RBP9.69□□□□□ -0.86
AP4E1-203ENST00000560508 GOLGA3Q08378 1498 aa9.68□□□□□ -0.86
AP4E1-203ENST00000560508 CDK11AQ9UQ88 783 aaPredicted RBP9.68□□□□□ -0.86
AP4E1-203ENST00000560508 ZNF326Q5BKZ1 582 aaKnown RBP9.66□□□□□ -0.86
AP4E1-203ENST00000560508 GTF3C3Q9Y5Q9 886 aa9.63□□□□□ -0.87
AP4E1-203ENST00000560508 CLIP1P30622 1438 aa9.63□□□□□ -0.87
AP4E1-203ENST00000560508 ARID3CA6NKF2 412 aa9.62□□□□□ -0.87
AP4E1-203ENST00000560508 WRNQ14191 1432 aaPredicted RBP eCLIP9.61□□□□□ -0.87
AP4E1-203ENST00000560508 ZNF777Q9ULD5 760 aaPredicted RBP9.6□□□□□ -0.87
AP4E1-203ENST00000560508 TONSLQ96HA7 1378 aa9.6□□□□□ -0.87
AP4E1-203ENST00000560508 CLSPNQ9HAW4 1339 aa9.6□□□□□ -0.87
AP4E1-203ENST00000560508 CEP162Q5TB80 1403 aa9.6□□□□□ -0.87
AP4E1-203ENST00000560508 CEP164Q9UPV0 1460 aa9.59□□□□□ -0.87
AP4E1-203ENST00000560508 ACIN1Q9UKV3 1341 aaKnown RBP9.57□□□□□ -0.88
AP4E1-203ENST00000560508 RTL5Q5HYW3 569 aaPredicted RBP9.56□□□□□ -0.88
AP4E1-203ENST00000560508 BCANQ96GW7 911 aa9.55□□□□□ -0.88
AP4E1-203ENST00000560508 KIF27Q86VH2 1401 aa9.55□□□□□ -0.88
AP4E1-203ENST00000560508 MTUS2Q5JR59 1369 aa9.54□□□□□ -0.88
AP4E1-203ENST00000560508 TNIKQ9UKE5 1360 aa9.54□□□□□ -0.88
AP4E1-203ENST00000560508 SMARCA2P51531 1590 aa9.53□□□□□ -0.88
AP4E1-203ENST00000560508 CECR2Q9BXF3 1484 aa9.52□□□□□ -0.88
AP4E1-203ENST00000560508 WIZO95785 1651 aa9.52□□□□□ -0.89
AP4E1-203ENST00000560508 TOP2AP11388 1531 aaKnown RBP9.5□□□□□ -0.89
AP4E1-203ENST00000560508 MROH2BQ7Z745 1585 aa9.5□□□□□ -0.89
AP4E1-203ENST00000560508 CANXP27824 592 aaKnown RBP9.49□□□□□ -0.89
AP4E1-203ENST00000560508 NEFMP07197 916 aa9.48□□□□□ -0.89
AP4E1-203ENST00000560508 ZBTB47Q9UFB7 747 aaPredicted RBP9.48□□□□□ -0.89
AP4E1-203ENST00000560508 CHMP7Q8WUX9 453 aaPredicted RBP9.47□□□□□ -0.89
AP4E1-203ENST00000560508 CCDC88BA6NC98 1476 aa9.47□□□□□ -0.89
AP4E1-203ENST00000560508 NPM1P06748 294 aaKnown RBP eCLIP9.45□□□□□ -0.9
AP4E1-203ENST00000560508 CHIC2Q9UKJ5 165 aa9.45□□□□□ -0.9
AP4E1-203ENST00000560508 ABCC8Q09428 1581 aa9.44□□□□□ -0.9
AP4E1-203ENST00000560508 SMARCA4P51532 1647 aa9.43□□□□□ -0.9
AP4E1-203ENST00000560508 DDX10Q13206 875 aaKnown RBP9.42□□□□□ -0.9
AP4E1-203ENST00000560508 TSPY4P0CV99 314 aa9.42□□□□□ -0.9
AP4E1-203ENST00000560508 TSPY10P0CW01 314 aa9.42□□□□□ -0.9
AP4E1-203ENST00000560508 ESF1Q9H501 851 aaKnown RBP9.41□□□□□ -0.9
AP4E1-203ENST00000560508 ERCC6Q03468 1493 aa9.41□□□□□ -0.9
AP4E1-203ENST00000560508 FHAD1B1AJZ9 1412 aa9.4□□□□□ -0.9
AP4E1-203ENST00000560508 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.39□□□□□ -0.91
AP4E1-203ENST00000560508 CHGAP10645 457 aaKnown RBP9.39□□□□□ -0.91
AP4E1-203ENST00000560508 ANP32AP39687 249 aaKnown RBP9.39□□□□□ -0.91
AP4E1-203ENST00000560508 EIF4G1Q04637 1599 aaKnown RBP9.39□□□□□ -0.91
AP4E1-203ENST00000560508 STAG3Q9UJ98 1225 aa9.39□□□□□ -0.91
AP4E1-203ENST00000560508 HNRNPUQ00839 825 aaKnown RBP eCLIP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 142.7 ms