RNA–Protein interactions for RNA: ENST00000504440.1

NPHP3-AS1-202, NPHP3 antisense RNA 1, humanhuman

TSL 1 (best) BASIC

Gene NPHP3-AS1, Length 2,507 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-AS1-202ENST00000504440 CHIC1Q5VXU3 224 aa18.33■□□□□ 0.52
NPHP3-AS1-202ENST00000504440 AEBP2Q6ZN18 517 aaPredicted RBP18.26■□□□□ 0.51
NPHP3-AS1-202ENST00000504440 PHF23Q9BUL5 403 aaPredicted RBP16.26■□□□□ 0.19
NPHP3-AS1-202ENST00000504440 SENP3Q9H4L4 574 aaPredicted RBP15.3■□□□□ 0.04
NPHP3-AS1-202ENST00000504440 PLPPR3Q6T4P5 718 aa15.13■□□□□ 0.01
NPHP3-AS1-202ENST00000504440 ADRA2BP18089 450 aa14.29□□□□□ -0.12
NPHP3-AS1-202ENST00000504440 FOXD1Q16676 465 aa14.2□□□□□ -0.14
NPHP3-AS1-202ENST00000504440 PPP6R1Q9UPN7 881 aa14.19□□□□□ -0.14
NPHP3-AS1-202ENST00000504440 KCNA4P22459 653 aa13.88□□□□□ -0.19
NPHP3-AS1-202ENST00000504440 EHMT2Q96KQ7 1210 aa13.68□□□□□ -0.22
NPHP3-AS1-202ENST00000504440 PIAS4Q8N2W9 510 aaPredicted RBP13.54□□□□□ -0.24
NPHP3-AS1-202ENST00000504440 NISCHQ9Y2I1 1504 aa13.53□□□□□ -0.24
NPHP3-AS1-202ENST00000504440 PPP4R3CPQ6ZMV5 832 aa13.45□□□□□ -0.26
NPHP3-AS1-202ENST00000504440 SLC4A1APQ9BWU0 796 aaKnown RBP13.27□□□□□ -0.29
NPHP3-AS1-202ENST00000504440 NCBP3Q53F19 620 aaKnown RBP13.19□□□□□ -0.3
NPHP3-AS1-202ENST00000504440 CSRNP3Q8WYN3 585 aa13.18□□□□□ -0.3
NPHP3-AS1-202ENST00000504440 NPM3O75607 178 aaKnown RBP13.1□□□□□ -0.31
NPHP3-AS1-202ENST00000504440 CNKSR2Q8WXI2 1034 aa12.9□□□□□ -0.34
NPHP3-AS1-202ENST00000504440 SCAF1Q9H7N4 1312 aaKnown RBP12.85□□□□□ -0.35
NPHP3-AS1-202ENST00000504440 ZBTB22O15209 634 aa12.81□□□□□ -0.36
NPHP3-AS1-202ENST00000504440 MSH5O43196 834 aa12.77□□□□□ -0.37
NPHP3-AS1-202ENST00000504440 MAPK8IP2Q13387 824 aaPredicted RBP12.73□□□□□ -0.37
NPHP3-AS1-202ENST00000504440 FOXD4L1Q9NU39 408 aa12.51□□□□□ -0.41
NPHP3-AS1-202ENST00000504440 RNF216Q9NWF9 866 aaPredicted RBP12.49□□□□□ -0.41
NPHP3-AS1-202ENST00000504440 DNAJC5BQ9UF47 199 aa12.47□□□□□ -0.41
NPHP3-AS1-202ENST00000504440 DMRT2Q9Y5R5 561 aa12.32□□□□□ -0.44
NPHP3-AS1-202ENST00000504440 HOXD11P31277 338 aaPredicted RBP12.29□□□□□ -0.44
NPHP3-AS1-202ENST00000504440 SLC4A2P04920 1241 aa12.24□□□□□ -0.45
NPHP3-AS1-202ENST00000504440 MYCNP04198 464 aaPredicted RBP12.03□□□□□ -0.48
NPHP3-AS1-202ENST00000504440 ATXN8OSP0DMR3 200 aa11.96□□□□□ -0.49
NPHP3-AS1-202ENST00000504440 RTN4Q9NQC3 1192 aaKnown RBP11.91□□□□□ -0.5
NPHP3-AS1-202ENST00000504440 FKBP8Q14318 412 aa11.88□□□□□ -0.51
NPHP3-AS1-202ENST00000504440 CCDC180Q9P1Z9 1646 aa11.85□□□□□ -0.51
NPHP3-AS1-202ENST00000504440 DCAF8L1A6NGE4 600 aa11.85□□□□□ -0.51
NPHP3-AS1-202ENST00000504440 AMER1Q5JTC6 1135 aaPredicted RBP11.8□□□□□ -0.52
NPHP3-AS1-202ENST00000504440 ATF5Q9Y2D1 282 aaPredicted RBP11.78□□□□□ -0.52
NPHP3-AS1-202ENST00000504440 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.76□□□□□ -0.53
NPHP3-AS1-202ENST00000504440 SLC24A1O60721 1099 aa11.68□□□□□ -0.54
NPHP3-AS1-202ENST00000504440 U3KPZ7 1027 aaPredicted RBP11.64□□□□□ -0.55
NPHP3-AS1-202ENST00000504440 SAMD1Q6SPF0 538 aaPredicted RBP11.61□□□□□ -0.55
NPHP3-AS1-202ENST00000504440 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.6□□□□□ -0.55
NPHP3-AS1-202ENST00000504440 HNRNPUL2Q1KMD3 747 aaKnown RBP11.6□□□□□ -0.55
NPHP3-AS1-202ENST00000504440 SHROOM4Q9ULL8 1493 aa11.55□□□□□ -0.56
NPHP3-AS1-202ENST00000504440 ABCC9O60706 1549 aa11.5□□□□□ -0.57
NPHP3-AS1-202ENST00000504440 ZNF219Q9P2Y4 722 aaPredicted RBP11.44□□□□□ -0.58
NPHP3-AS1-202ENST00000504440 SUPT5HO00267 1087 aaKnown RBP11.37□□□□□ -0.59
NPHP3-AS1-202ENST00000504440 ZCCHC6Q5VYS8 1495 aaKnown RBP11.34□□□□□ -0.59
NPHP3-AS1-202ENST00000504440 APLP2Q06481 763 aa11.29□□□□□ -0.6
NPHP3-AS1-202ENST00000504440 SPDYE4A6NLX3 237 aa11.27□□□□□ -0.61
NPHP3-AS1-202ENST00000504440 MKRN4PQ13434 485 aaPredicted RBP11.27□□□□□ -0.61
NPHP3-AS1-202ENST00000504440 DCAF1Q9Y4B6 1507 aa11.2□□□□□ -0.62
NPHP3-AS1-202ENST00000504440 TRHP20396 242 aaPredicted RBP11.19□□□□□ -0.62
NPHP3-AS1-202ENST00000504440 SPINK5Q9NQ38 1064 aaPredicted RBP11.19□□□□□ -0.62
NPHP3-AS1-202ENST00000504440 FBXO3Q9UK99 471 aa11.19□□□□□ -0.62
NPHP3-AS1-202ENST00000504440 DCAF8L2P0C7V8 631 aa11.16□□□□□ -0.62
NPHP3-AS1-202ENST00000504440 POLA2Q14181 598 aa11.14□□□□□ -0.63
NPHP3-AS1-202ENST00000504440 FBLN2P98095 1184 aa11.12□□□□□ -0.63
NPHP3-AS1-202ENST00000504440 PROM2Q8N271 834 aa11.12□□□□□ -0.63
NPHP3-AS1-202ENST00000504440 MYO15BQ96JP2 1530 aa11.11□□□□□ -0.63
NPHP3-AS1-202ENST00000504440 VASPP50552 380 aaPredicted RBP11.09□□□□□ -0.63
NPHP3-AS1-202ENST00000504440 CAPN15O75808 1086 aa11.08□□□□□ -0.64
NPHP3-AS1-202ENST00000504440 RNF39Q9H2S5 420 aa11.05□□□□□ -0.64
NPHP3-AS1-202ENST00000504440 NACADO15069 1562 aa11.05□□□□□ -0.64
NPHP3-AS1-202ENST00000504440 RB1CC1Q8TDY2 1594 aa11.03□□□□□ -0.64
NPHP3-AS1-202ENST00000504440 IFNLR1Q8IU57 520 aaPredicted RBP11.03□□□□□ -0.64
NPHP3-AS1-202ENST00000504440 ABCB7O75027 752 aa10.97□□□□□ -0.65
NPHP3-AS1-202ENST00000504440 PLCB2Q00722 1185 aa10.92□□□□□ -0.66
NPHP3-AS1-202ENST00000504440 C1QBPQ07021 282 aaKnown RBP10.9□□□□□ -0.66
NPHP3-AS1-202ENST00000504440 PKD2Q13563 968 aa10.88□□□□□ -0.67
NPHP3-AS1-202ENST00000504440 ZBTB12Q9Y330 459 aaPredicted RBP10.87□□□□□ -0.67
NPHP3-AS1-202ENST00000504440 SCRIBQ14160 1630 aa10.86□□□□□ -0.67
NPHP3-AS1-202ENST00000504440 PCGF6Q9BYE7 350 aa10.85□□□□□ -0.67
NPHP3-AS1-202ENST00000504440 UNC13AQ9UPW8 1703 aa10.83□□□□□ -0.67
NPHP3-AS1-202ENST00000504440 HRCP23327 699 aa10.83□□□□□ -0.68
NPHP3-AS1-202ENST00000504440 LOC105371045A0A1W2PR82 267 aa10.82□□□□□ -0.68
NPHP3-AS1-202ENST00000504440 HAP1P54257 671 aaPredicted RBP10.8□□□□□ -0.68
NPHP3-AS1-202ENST00000504440 BICRAQ9NZM4 1560 aa10.8□□□□□ -0.68
NPHP3-AS1-202ENST00000504440 PABPN1Q86U42 306 aaKnown RBP eCLIP10.79□□□□□ -0.68
NPHP3-AS1-202ENST00000504440 KLHL34Q8N239 644 aa10.78□□□□□ -0.68
NPHP3-AS1-202ENST00000504440 ZNF692Q9BU19 519 aaPredicted RBP10.78□□□□□ -0.68
NPHP3-AS1-202ENST00000504440 OSCARQ8IYS5 282 aa10.75□□□□□ -0.69
NPHP3-AS1-202ENST00000504440 PPARGC1BQ86YN6 1023 aaKnown RBP10.74□□□□□ -0.69
NPHP3-AS1-202ENST00000504440 DSG3P32926 999 aa10.74□□□□□ -0.69
NPHP3-AS1-202ENST00000504440 SPOCK2Q92563 424 aa10.73□□□□□ -0.69
NPHP3-AS1-202ENST00000504440 ECM2O94769 699 aaPredicted RBP10.68□□□□□ -0.7
NPHP3-AS1-202ENST00000504440 PLCD3Q8N3E9 789 aa10.68□□□□□ -0.7
NPHP3-AS1-202ENST00000504440 SSUH2Q9Y2M2 353 aa10.67□□□□□ -0.7
NPHP3-AS1-202ENST00000504440 SPDYE2BA6NHP3 402 aa10.66□□□□□ -0.7
NPHP3-AS1-202ENST00000504440 SPDYE6P0CI01 402 aa10.66□□□□□ -0.7
NPHP3-AS1-202ENST00000504440 SPDYE2Q495Y8 402 aa10.66□□□□□ -0.7
NPHP3-AS1-202ENST00000504440 POTEDQ86YR6 584 aa10.66□□□□□ -0.7
NPHP3-AS1-202ENST00000504440 STAG3Q9UJ98 1225 aa10.66□□□□□ -0.7
NPHP3-AS1-202ENST00000504440 MIER1Q8N108 512 aa10.63□□□□□ -0.71
NPHP3-AS1-202ENST00000504440 NPM1P06748 294 aaKnown RBP eCLIP10.63□□□□□ -0.71
NPHP3-AS1-202ENST00000504440 RGL2O15211 777 aa10.6□□□□□ -0.71
NPHP3-AS1-202ENST00000504440 BBXQ8WY36 941 aaPredicted RBP10.58□□□□□ -0.72
NPHP3-AS1-202ENST00000504440 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.58□□□□□ -0.72
NPHP3-AS1-202ENST00000504440 VSIG10Q8N0Z9 540 aa10.57□□□□□ -0.72
NPHP3-AS1-202ENST00000504440 PAXIP1Q6ZW49 1069 aaPredicted RBP10.56□□□□□ -0.72
NPHP3-AS1-202ENST00000504440 CFAP44Q96MT7 982 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms