Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
COL6A3P12111 DCLK1-201ENST00000255448 5703 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
COL6A3P12111 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 AL445189.1-201ENST00000405722 338 ntBASIC5.81□□□□□ -1.48
COL6A3P12111 RPL23AP60-201ENST00000450011 454 ntBASIC5.81□□□□□ -1.48
COL6A3P12111 PRSS3P4-201ENST00000453323 162 ntBASIC5.81□□□□□ -1.48
COL6A3P12111 RPL7P32-201ENST00000457119 744 ntBASIC5.81□□□□□ -1.48
COL6A3P12111 AC021678.3-201ENST00000517893 476 ntBASIC5.81□□□□□ -1.48
COL6A3P12111 MIR5095-201ENST00000578844 88 ntBASIC5.81□□□□□ -1.48
COL6A3P12111 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.81□□□□□ -1.48
COL6A3P12111 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.81□□□□□ -1.48
COL6A3P12111 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC5.81□□□□□ -1.48
COL6A3P12111 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC5.81□□□□□ -1.48
COL6A3P12111 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
COL6A3P12111 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC5.81□□□□□ -1.48
COL6A3P12111 PARP9-202ENST00000462315 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 AL121768.1-201ENST00000613917 2544 ntBASIC5.81□□□□□ -1.48
COL6A3P12111 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 AL132640.2-201ENST00000559968 1698 ntBASIC5.81□□□□□ -1.48
COL6A3P12111 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.81□□□□□ -1.48
COL6A3P12111 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.81□□□□□ -1.48
COL6A3P12111 MIR4715-201ENST00000584117 79 ntBASIC5.81□□□□□ -1.48
COL6A3P12111 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.81□□□□□ -1.48
COL6A3P12111 AL132640.3-201ENST00000630473 177 ntBASIC5.81□□□□□ -1.48
COL6A3P12111 PTPN4-201ENST00000263708 10300 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
COL6A3P12111 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.81□□□□□ -1.48
COL6A3P12111 PLEC-207ENST00000398774 14646 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 TBC1D16-201ENST00000310924 10936 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 AL590399.4-201ENST00000436561 601 ntBASIC5.81□□□□□ -1.48
COL6A3P12111 AC092375.1-201ENST00000550410 637 ntBASIC5.81□□□□□ -1.48
COL6A3P12111 AC074141.1-201ENST00000588129 2995 ntBASIC5.81□□□□□ -1.48
COL6A3P12111 AC011944.2-201ENST00000624440 683 ntBASIC5.81□□□□□ -1.48
COL6A3P12111 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC5.81□□□□□ -1.48
COL6A3P12111 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.81□□□□□ -1.48
COL6A3P12111 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A3P12111 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A3P12111 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A3P12111 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC5.8□□□□□ -1.48
COL6A3P12111 AL627171.1-201ENST00000618845 1308 ntBASIC5.8□□□□□ -1.48
COL6A3P12111 CNTN4-202ENST00000397461 5198 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
COL6A3P12111 NOTCH2-201ENST00000256646 11389 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A3P12111 FAM32BP-201ENST00000344033 333 ntBASIC5.8□□□□□ -1.48
COL6A3P12111 MIR133B-201ENST00000362210 119 ntBASIC5.8□□□□□ -1.48
COL6A3P12111 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
COL6A3P12111 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC5.8□□□□□ -1.48
COL6A3P12111 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC5.8□□□□□ -1.48
COL6A3P12111 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.8□□□□□ -1.48
COL6A3P12111 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A3P12111 BNIP3P19-201ENST00000605397 577 ntBASIC5.8□□□□□ -1.48
COL6A3P12111 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
COL6A3P12111 GPATCH8-208ENST00000591680 4692 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
COL6A3P12111 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.8□□□□□ -1.48
COL6A3P12111 ABL2-204ENST00000502732 12144 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A3P12111 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC5.8□□□□□ -1.48
COL6A3P12111 ZAN-204ENST00000546292 8378 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
COL6A3P12111 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A3P12111 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A3P12111 RPS10-NUDT3-202ENST00000639725 4782 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
COL6A3P12111 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
COL6A3P12111 GSTO2-202ENST00000369707 6423 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A3P12111 GCC2-201ENST00000309863 7537 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
COL6A3P12111 CACNA1C-202ENST00000335762 6968 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
COL6A3P12111 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A3P12111 MXRA5-201ENST00000217939 9793 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
COL6A3P12111 MPRIP-205ENST00000395811 10960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A3P12111 RNA5SP464-201ENST00000516251 108 ntBASIC5.8□□□□□ -1.48
COL6A3P12111 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.8□□□□□ -1.48
COL6A3P12111 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.8□□□□□ -1.48
COL6A3P12111 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A3P12111 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A3P12111 AC097063.1-201ENST00000426714 1797 ntBASIC5.8□□□□□ -1.48
COL6A3P12111 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A3P12111 HECTD4-202ENST00000377560 15759 ntAPPRIS P5 TSL 5 BASIC5.8□□□□□ -1.48
COL6A3P12111 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC5.8□□□□□ -1.48
COL6A3P12111 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A3P12111 FRY-202ENST00000380250 10688 ntTSL 5 BASIC5.8□□□□□ -1.48
COL6A3P12111 FRY-209ENST00000642040 10697 ntBASIC5.8□□□□□ -1.48
COL6A3P12111 COL4A5-201ENST00000328300 6483 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A3P12111 COL4A5-202ENST00000361603 6469 ntAPPRIS P3 TSL 2 BASIC5.8□□□□□ -1.48
COL6A3P12111 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC5.8□□□□□ -1.48
COL6A3P12111 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.79□□□□□ -1.48
COL6A3P12111 RNU1-149P-201ENST00000390870 161 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A3P12111 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.79□□□□□ -1.48
COL6A3P12111 AC126615.2-201ENST00000553003 515 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC5.79□□□□□ -1.48
COL6A3P12111 AC017100.2-201ENST00000584628 355 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 AC022916.3-201ENST00000592961 742 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 ACACB-201ENST00000338432 9360 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A3P12111 ZEB2-245ENST00000638087 9339 ntTSL 5 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms