Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC4.03□□□□□ -1.76
PRKDCP78527 AC109327.1-201ENST00000471666 403 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC4.03□□□□□ -1.76
PRKDCP78527 AP006289.1-201ENST00000538089 277 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.03□□□□□ -1.76
PRKDCP78527 MIR4284-201ENST00000578924 81 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 LINC00654-201ENST00000379053 6113 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 FAM71F2-205ENST00000641605 5749 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 ZFHX2-202ENST00000419474 9182 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
PRKDCP78527 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 CEP41-217ENST00000541543 6222 ntTSL 2 BASIC4.03□□□□□ -1.76
PRKDCP78527 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC4.03□□□□□ -1.76
PRKDCP78527 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
PRKDCP78527 AC008467.1-201ENST00000512693 5471 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
PRKDCP78527 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.03□□□□□ -1.76
PRKDCP78527 AC211486.3-201ENST00000412694 621 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 AC009237.10-201ENST00000414112 510 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 AC009237.5-201ENST00000414271 501 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 NIFKP3-201ENST00000417799 865 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 VDAC2P4-201ENST00000452925 711 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC4.03□□□□□ -1.76
PRKDCP78527 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC4.03□□□□□ -1.76
PRKDCP78527 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC4.03□□□□□ -1.76
PRKDCP78527 AC067959.1-201ENST00000604334 379 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 AL132640.3-201ENST00000630473 177 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 AC022726.2-201ENST00000634673 547 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 GRB10-204ENST00000398812 4705 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC4.03□□□□□ -1.76
PRKDCP78527 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
PRKDCP78527 PDPR-201ENST00000288050 9255 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.77
PRKDCP78527 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC4.03□□□□□ -1.77
PRKDCP78527 FAM19A2-211ENST00000550003 2499 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
PRKDCP78527 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
PRKDCP78527 AC105235.1-201ENST00000623208 1816 ntBASIC4.03□□□□□ -1.77
PRKDCP78527 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.02□□□□□ -1.77
PRKDCP78527 CLTC-215ENST00000621829 8587 ntAPPRIS ALT1 TSL 2 BASIC4.02□□□□□ -1.77
PRKDCP78527 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.02□□□□□ -1.77
PRKDCP78527 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.02□□□□□ -1.77
PRKDCP78527 AC092490.3-201ENST00000545370 572 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 MIR4715-201ENST00000584117 79 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 AC019193.2-201ENST00000610012 634 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC4.02□□□□□ -1.77
PRKDCP78527 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC4.02□□□□□ -1.77
PRKDCP78527 MYO9A-201ENST00000356056 12411 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC4.02□□□□□ -1.77
PRKDCP78527 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 SLC38A1-201ENST00000398637 8066 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC4.02□□□□□ -1.77
PRKDCP78527 KIF13A-204ENST00000378826 5747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 CTNND1-210ENST00000524630 6553 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
PRKDCP78527 MR1-205ENST00000434571 7479 ntTSL 5 BASIC4.02□□□□□ -1.77
PRKDCP78527 DCLK1-201ENST00000255448 5703 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 MUC6-201ENST00000421673 8006 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
PRKDCP78527 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC4.02□□□□□ -1.77
PRKDCP78527 MIR133B-201ENST00000362210 119 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 KNOP1P3-201ENST00000446933 426 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 ACA64.4-201ENST00000459070 127 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.02□□□□□ -1.77
PRKDCP78527 AL356752.1-201ENST00000615844 593 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 MAPK10-365ENST00000641902 3825 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 AC107884.1-207ENST00000504206 4433 ntTSL 3 BASIC4.02□□□□□ -1.77
PRKDCP78527 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC4.02□□□□□ -1.77
PRKDCP78527 ATP8B1-201ENST00000283684 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
PRKDCP78527 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 AL121768.1-201ENST00000613917 2544 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 HNRNPU-219ENST00000639628 4546 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC4.02□□□□□ -1.77
PRKDCP78527 SNHG14-226ENST00000640631 13074 ntTSL 5 BASIC4.02□□□□□ -1.77
PRKDCP78527 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC4.02□□□□□ -1.77
PRKDCP78527 RPL7P57-201ENST00000423238 740 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 DUTP1-201ENST00000493631 470 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 RPS4XP20-201ENST00000505751 772 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 MRPS33P2-201ENST00000507850 322 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 MIR4444-1-201ENST00000581696 74 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 MIR4444-2-201ENST00000584390 74 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.02□□□□□ -1.77
PRKDCP78527 AC015660.5-201ENST00000623238 564 ntBASIC4.02□□□□□ -1.77
PRKDCP78527 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
PRKDCP78527 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
PRKDCP78527 MICAL2-203ENST00000379612 6625 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 138.4 ms