RNA–Protein interactions for RNA: ENST00000379053.4

LINC00654-201, long intergenic non-protein coding RNA 654, humanhuman

TSL 1 (best) BASIC

Gene LINC00654, Length 6,113 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00654-201ENST00000379053 DCAF8L2P0C7V8 631 aa19.45■□□□□ 0.7
LINC00654-201ENST00000379053 SUPT5HO00267 1087 aaKnown RBP18.01■□□□□ 0.47
LINC00654-201ENST00000379053 FAM9AQ8IZU1 332 aaPredicted RBP17.75■□□□□ 0.43
LINC00654-201ENST00000379053 SHROOM4Q9ULL8 1493 aa17.65■□□□□ 0.42
LINC00654-201ENST00000379053 EHMT2Q96KQ7 1210 aa17.65■□□□□ 0.42
LINC00654-201ENST00000379053 NISCHQ9Y2I1 1504 aa17.6■□□□□ 0.41
LINC00654-201ENST00000379053 APLP2Q06481 763 aa17.39■□□□□ 0.38
LINC00654-201ENST00000379053 PELP1Q8IZL8 1130 aaKnown RBP17.02■□□□□ 0.31
LINC00654-201ENST00000379053 TTBK1Q5TCY1 1321 aaPredicted RBP17■□□□□ 0.31
LINC00654-201ENST00000379053 RANGAP1P46060 587 aaPredicted RBP16.99■□□□□ 0.31
LINC00654-201ENST00000379053 ATP1B4Q9UN42 357 aaPredicted RBP16.94■□□□□ 0.3
LINC00654-201ENST00000379053 TRIM41Q8WV44 630 aa16.67■□□□□ 0.26
LINC00654-201ENST00000379053 PCGF6Q9BYE7 350 aa16.63■□□□□ 0.25
LINC00654-201ENST00000379053 UBTFP17480 764 aaKnown RBP16.63■□□□□ 0.25
LINC00654-201ENST00000379053 MYT1LQ9UL68 1186 aa16.53■□□□□ 0.24
LINC00654-201ENST00000379053 CCER1Q8TC90 406 aaPredicted RBP16.43■□□□□ 0.22
LINC00654-201ENST00000379053 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.41■□□□□ 0.22
LINC00654-201ENST00000379053 HNRNPUL2Q1KMD3 747 aaKnown RBP16.41■□□□□ 0.22
LINC00654-201ENST00000379053 ERICH6Q7L0X2 663 aa16.33■□□□□ 0.21
LINC00654-201ENST00000379053 CENPBP07199 599 aaPredicted RBP16.24■□□□□ 0.19
LINC00654-201ENST00000379053 ZEB1P37275 1124 aaPredicted RBP16.22■□□□□ 0.19
LINC00654-201ENST00000379053 CHIC1Q5VXU3 224 aa16.2■□□□□ 0.18
LINC00654-201ENST00000379053 NEFLP07196 543 aa16.15■□□□□ 0.18
LINC00654-201ENST00000379053 PPARGC1BQ86YN6 1023 aaKnown RBP16.14■□□□□ 0.17
LINC00654-201ENST00000379053 ITGAEP38570 1179 aa16.14■□□□□ 0.17
LINC00654-201ENST00000379053 MYT1Q01538 1121 aa16.14■□□□□ 0.17
LINC00654-201ENST00000379053 POLR3GLQ9BT43 218 aa16.13■□□□□ 0.17
LINC00654-201ENST00000379053 YTHDC1Q96MU7 727 aaKnown RBP16.02■□□□□ 0.16
LINC00654-201ENST00000379053 SLC4A1APQ9BWU0 796 aaKnown RBP15.99■□□□□ 0.15
LINC00654-201ENST00000379053 CNGB1Q14028 1251 aaPredicted RBP15.93■□□□□ 0.14
LINC00654-201ENST00000379053 PABPN1Q86U42 306 aaKnown RBP eCLIP15.88■□□□□ 0.13
LINC00654-201ENST00000379053 ABCC9O60706 1549 aa15.84■□□□□ 0.13
LINC00654-201ENST00000379053 FBLN2P98095 1184 aa15.8■□□□□ 0.12
LINC00654-201ENST00000379053 DAXXQ9UER7 740 aaPredicted RBP15.8■□□□□ 0.12
LINC00654-201ENST00000379053 TRIM26Q12899 539 aaPredicted RBP15.72■□□□□ 0.11
LINC00654-201ENST00000379053 ESF1Q9H501 851 aaKnown RBP15.72■□□□□ 0.11
LINC00654-201ENST00000379053 NPM1P06748 294 aaKnown RBP eCLIP15.71■□□□□ 0.1
LINC00654-201ENST00000379053 FAM50AQ14320 339 aaKnown RBP15.7■□□□□ 0.1
LINC00654-201ENST00000379053 TRIM52Q96A61 297 aa15.69■□□□□ 0.1
LINC00654-201ENST00000379053 LOC105371045A0A1W2PR82 267 aa15.64■□□□□ 0.09
LINC00654-201ENST00000379053 BCANQ96GW7 911 aa15.61■□□□□ 0.09
LINC00654-201ENST00000379053 CLSPNQ9HAW4 1339 aa15.56■□□□□ 0.08
LINC00654-201ENST00000379053 ZNF326Q5BKZ1 582 aaKnown RBP15.53■□□□□ 0.08
LINC00654-201ENST00000379053 SLC24A1O60721 1099 aa15.51■□□□□ 0.07
LINC00654-201ENST00000379053 ARID3CA6NKF2 412 aa15.47■□□□□ 0.07
LINC00654-201ENST00000379053 NEUROD1Q13562 356 aa15.47■□□□□ 0.07
LINC00654-201ENST00000379053 HRCP23327 699 aa15.44■□□□□ 0.06
LINC00654-201ENST00000379053 ZBTB47Q9UFB7 747 aaPredicted RBP15.4■□□□□ 0.06
LINC00654-201ENST00000379053 PLPPR3Q6T4P5 718 aa15.4■□□□□ 0.06
LINC00654-201ENST00000379053 ZNF316A6NFI3 1004 aaPredicted RBP15.39■□□□□ 0.05
LINC00654-201ENST00000379053 P3H3Q8IVL6 736 aa15.37■□□□□ 0.05
LINC00654-201ENST00000379053 ZNF777Q9ULD5 760 aaPredicted RBP15.36■□□□□ 0.05
LINC00654-201ENST00000379053 NEFMP07197 916 aa15.35■□□□□ 0.05
LINC00654-201ENST00000379053 BCL11AQ9H165 835 aa15.3■□□□□ 0.04
LINC00654-201ENST00000379053 STAG3Q9UJ98 1225 aa15.3■□□□□ 0.04
LINC00654-201ENST00000379053 CDK11AQ9UQ88 783 aaPredicted RBP15.28■□□□□ 0.04
LINC00654-201ENST00000379053 AEBP2Q6ZN18 517 aaPredicted RBP15.26■□□□□ 0.03
LINC00654-201ENST00000379053 TRHP20396 242 aaPredicted RBP15.26■□□□□ 0.03
LINC00654-201ENST00000379053 CANXP27824 592 aaKnown RBP15.24■□□□□ 0.03
LINC00654-201ENST00000379053 CHGAP10645 457 aaKnown RBP15.24■□□□□ 0.03
LINC00654-201ENST00000379053 ANP32CO43423 234 aa15.2■□□□□ 0.02
LINC00654-201ENST00000379053 RTL5Q5HYW3 569 aaPredicted RBP15.19■□□□□ 0.02
LINC00654-201ENST00000379053 DIEXFQ68CQ4 756 aaKnown RBP15.19■□□□□ 0.02
LINC00654-201ENST00000379053 CSRNP3Q8WYN3 585 aa15.09■□□□□ 0.01
LINC00654-201ENST00000379053 SCAF1Q9H7N4 1312 aaKnown RBP15.04■□□□□ -0
LINC00654-201ENST00000379053 ARID4BQ4LE39 1312 aaPredicted RBP15.01□□□□□ -0.01
LINC00654-201ENST00000379053 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.01□□□□□ -0.01
LINC00654-201ENST00000379053 CHMP7Q8WUX9 453 aaPredicted RBP15□□□□□ -0.01
LINC00654-201ENST00000379053 A0A0G2JS52 829 aa14.99□□□□□ -0.01
LINC00654-201ENST00000379053 ERCC6Q03468 1493 aa14.97□□□□□ -0.01
LINC00654-201ENST00000379053 SCRIBQ14160 1630 aa14.96□□□□□ -0.02
LINC00654-201ENST00000379053 C14orf37Q86TY3 774 aa14.93□□□□□ -0.02
LINC00654-201ENST00000379053 TSPY4P0CV99 314 aa14.91□□□□□ -0.02
LINC00654-201ENST00000379053 TSPY10P0CW01 314 aa14.91□□□□□ -0.02
LINC00654-201ENST00000379053 HAP1P54257 671 aaPredicted RBP14.9□□□□□ -0.02
LINC00654-201ENST00000379053 CHIC2Q9UKJ5 165 aa14.89□□□□□ -0.03
LINC00654-201ENST00000379053 PLEKHG5O94827 1062 aa14.89□□□□□ -0.03
LINC00654-201ENST00000379053 TONSLQ96HA7 1378 aa14.87□□□□□ -0.03
LINC00654-201ENST00000379053 NPM2Q86SE8 214 aaKnown RBP14.87□□□□□ -0.03
LINC00654-201ENST00000379053 GTF3C3Q9Y5Q9 886 aa14.86□□□□□ -0.03
LINC00654-201ENST00000379053 ZBTB7CA1YPR0 619 aa14.86□□□□□ -0.03
LINC00654-201ENST00000379053 PPP1R15AO75807 674 aaPredicted RBP14.86□□□□□ -0.03
LINC00654-201ENST00000379053 KCNH8Q96L42 1107 aa14.84□□□□□ -0.03
LINC00654-201ENST00000379053 SENP3Q9H4L4 574 aaPredicted RBP14.84□□□□□ -0.03
LINC00654-201ENST00000379053 KDM2AQ9Y2K7 1162 aa14.79□□□□□ -0.04
LINC00654-201ENST00000379053 HSP90AA1P07900 732 aaKnown RBP14.77□□□□□ -0.05
LINC00654-201ENST00000379053 SALL2Q9Y467 1007 aaPredicted RBP14.76□□□□□ -0.05
LINC00654-201ENST00000379053 MTUS2Q5JR59 1369 aa14.75□□□□□ -0.05
LINC00654-201ENST00000379053 WDR43Q15061 677 aaKnown RBP eCLIP14.72□□□□□ -0.05
LINC00654-201ENST00000379053 PLEKHD1A6NEE1 506 aa14.71□□□□□ -0.05
LINC00654-201ENST00000379053 FAM9BQ8IZU0 186 aa14.71□□□□□ -0.05
LINC00654-201ENST00000379053 ANP32AP39687 249 aaKnown RBP14.71□□□□□ -0.06
LINC00654-201ENST00000379053 TMC1Q8TDI8 760 aa14.69□□□□□ -0.06
LINC00654-201ENST00000379053 UPF2Q9HAU5 1272 aaKnown RBP14.69□□□□□ -0.06
LINC00654-201ENST00000379053 RB1CC1Q8TDY2 1594 aa14.67□□□□□ -0.06
LINC00654-201ENST00000379053 DCAF8L1A6NGE4 600 aa14.67□□□□□ -0.06
LINC00654-201ENST00000379053 HNRNPUQ00839 825 aaKnown RBP eCLIP14.66□□□□□ -0.06
LINC00654-201ENST00000379053 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.64□□□□□ -0.07
LINC00654-201ENST00000379053 DDX10Q13206 875 aaKnown RBP14.64□□□□□ -0.07
LINC00654-201ENST00000379053 ARXQ96QS3 562 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms