RNA–Protein interactions for RNA: ENST00000417799.2

NIFKP3-201, Transcript of nucleolar protein interacting with the FHA domain of MKI67 pseudogene 3, humanhuman

BASIC

Gene NIFKP3, Length 865 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIFKP3-201ENST00000417799 AEBP2Q6ZN18 517 aaPredicted RBP23.72■■□□□ 1.39
NIFKP3-201ENST00000417799 CHIC1Q5VXU3 224 aa23.16■■□□□ 1.3
NIFKP3-201ENST00000417799 PHF23Q9BUL5 403 aaPredicted RBP20.41■□□□□ 0.86
NIFKP3-201ENST00000417799 SENP3Q9H4L4 574 aaPredicted RBP20.34■□□□□ 0.85
NIFKP3-201ENST00000417799 FOXD1Q16676 465 aa18.99■□□□□ 0.63
NIFKP3-201ENST00000417799 PLPPR3Q6T4P5 718 aa18.99■□□□□ 0.63
NIFKP3-201ENST00000417799 POTEDQ86YR6 584 aa18.38■□□□□ 0.53
NIFKP3-201ENST00000417799 MSH5O43196 834 aa18■□□□□ 0.47
NIFKP3-201ENST00000417799 ADRA2BP18089 450 aa17.9■□□□□ 0.46
NIFKP3-201ENST00000417799 PPP6R1Q9UPN7 881 aa17.88■□□□□ 0.45
NIFKP3-201ENST00000417799 PIAS4Q8N2W9 510 aaPredicted RBP17.59■□□□□ 0.41
NIFKP3-201ENST00000417799 KCNA4P22459 653 aa16.84■□□□□ 0.29
NIFKP3-201ENST00000417799 PPP4R3CPQ6ZMV5 832 aa16.79■□□□□ 0.28
NIFKP3-201ENST00000417799 NCBP3Q53F19 620 aaKnown RBP16.47■□□□□ 0.23
NIFKP3-201ENST00000417799 SCAF1Q9H7N4 1312 aaKnown RBP16.39■□□□□ 0.21
NIFKP3-201ENST00000417799 CNKSR2Q8WXI2 1034 aa16.23■□□□□ 0.19
NIFKP3-201ENST00000417799 NPM3O75607 178 aaKnown RBP16.21■□□□□ 0.19
NIFKP3-201ENST00000417799 MAPK8IP2Q13387 824 aaPredicted RBP16.12■□□□□ 0.17
NIFKP3-201ENST00000417799 EHMT2Q96KQ7 1210 aa16.11■□□□□ 0.17
NIFKP3-201ENST00000417799 SLC4A1APQ9BWU0 796 aaKnown RBP16.11■□□□□ 0.17
NIFKP3-201ENST00000417799 DMRT2Q9Y5R5 561 aa16.05■□□□□ 0.16
NIFKP3-201ENST00000417799 RNF216Q9NWF9 866 aaPredicted RBP15.81■□□□□ 0.12
NIFKP3-201ENST00000417799 CSRNP3Q8WYN3 585 aa15.74■□□□□ 0.11
NIFKP3-201ENST00000417799 CACNB1Q02641 598 aaPredicted RBP15.69■□□□□ 0.1
NIFKP3-201ENST00000417799 DNAJC5BQ9UF47 199 aa15.67■□□□□ 0.1
NIFKP3-201ENST00000417799 HOXD11P31277 338 aaPredicted RBP15.64■□□□□ 0.09
NIFKP3-201ENST00000417799 ZBTB22O15209 634 aa15.49■□□□□ 0.07
NIFKP3-201ENST00000417799 FOXD4L1Q9NU39 408 aa15.39■□□□□ 0.05
NIFKP3-201ENST00000417799 RNF39Q9H2S5 420 aa15.31■□□□□ 0.04
NIFKP3-201ENST00000417799 DCAF8L1A6NGE4 600 aa15.3■□□□□ 0.04
NIFKP3-201ENST00000417799 SLC4A2P04920 1241 aa15.21■□□□□ 0.03
NIFKP3-201ENST00000417799 C1QBPQ07021 282 aaKnown RBP15.07■□□□□ 0
NIFKP3-201ENST00000417799 MYCNP04198 464 aaPredicted RBP14.98□□□□□ -0.01
NIFKP3-201ENST00000417799 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.92□□□□□ -0.02
NIFKP3-201ENST00000417799 ATXN8OSP0DMR3 200 aa14.81□□□□□ -0.04
NIFKP3-201ENST00000417799 U3KPZ7 1027 aaPredicted RBP14.71□□□□□ -0.05
NIFKP3-201ENST00000417799 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.67□□□□□ -0.06
NIFKP3-201ENST00000417799 HNRNPUL2Q1KMD3 747 aaKnown RBP14.67□□□□□ -0.06
NIFKP3-201ENST00000417799 SAMD1Q6SPF0 538 aaPredicted RBP14.63□□□□□ -0.07
NIFKP3-201ENST00000417799 ATF5Q9Y2D1 282 aaPredicted RBP14.54□□□□□ -0.08
NIFKP3-201ENST00000417799 APLP2Q06481 763 aa14.43□□□□□ -0.1
NIFKP3-201ENST00000417799 POTEHQ6S545 545 aa14.31□□□□□ -0.12
NIFKP3-201ENST00000417799 ZNF219Q9P2Y4 722 aaPredicted RBP14.28□□□□□ -0.12
NIFKP3-201ENST00000417799 FKBP8Q14318 412 aa14.21□□□□□ -0.13
NIFKP3-201ENST00000417799 SPINK5Q9NQ38 1064 aaPredicted RBP14.19□□□□□ -0.14
NIFKP3-201ENST00000417799 TRHP20396 242 aaPredicted RBP14.16□□□□□ -0.14
NIFKP3-201ENST00000417799 DSG3P32926 999 aa14.16□□□□□ -0.14
NIFKP3-201ENST00000417799 CAPN15O75808 1086 aa14.12□□□□□ -0.15
NIFKP3-201ENST00000417799 POLA2Q14181 598 aa14.01□□□□□ -0.17
NIFKP3-201ENST00000417799 MKRN4PQ13434 485 aaPredicted RBP13.93□□□□□ -0.18
NIFKP3-201ENST00000417799 FBLN2P98095 1184 aa13.92□□□□□ -0.18
NIFKP3-201ENST00000417799 ABCB7O75027 752 aa13.89□□□□□ -0.19
NIFKP3-201ENST00000417799 SPDYE4A6NLX3 237 aa13.82□□□□□ -0.2
NIFKP3-201ENST00000417799 ZBTB12Q9Y330 459 aaPredicted RBP13.8□□□□□ -0.2
NIFKP3-201ENST00000417799 AMER1Q5JTC6 1135 aaPredicted RBP13.64□□□□□ -0.23
NIFKP3-201ENST00000417799 PROM2Q8N271 834 aa13.62□□□□□ -0.23
NIFKP3-201ENST00000417799 FBXO3Q9UK99 471 aa13.61□□□□□ -0.23
NIFKP3-201ENST00000417799 RTN4Q9NQC3 1192 aaKnown RBP13.6□□□□□ -0.23
NIFKP3-201ENST00000417799 RBM42Q9BTD8 480 aaKnown RBP13.53□□□□□ -0.24
NIFKP3-201ENST00000417799 OSCARQ8IYS5 282 aa13.51□□□□□ -0.25
NIFKP3-201ENST00000417799 ZNF692Q9BU19 519 aaPredicted RBP13.48□□□□□ -0.25
NIFKP3-201ENST00000417799 SPDYE2BA6NHP3 402 aa13.46□□□□□ -0.25
NIFKP3-201ENST00000417799 SPDYE6P0CI01 402 aa13.46□□□□□ -0.25
NIFKP3-201ENST00000417799 SPDYE2Q495Y8 402 aa13.46□□□□□ -0.25
NIFKP3-201ENST00000417799 CHRDL2Q6WN34 429 aa13.41□□□□□ -0.26
NIFKP3-201ENST00000417799 NISCHQ9Y2I1 1504 aa13.4□□□□□ -0.26
NIFKP3-201ENST00000417799 VASPP50552 380 aaPredicted RBP13.39□□□□□ -0.27
NIFKP3-201ENST00000417799 SSUH2Q9Y2M2 353 aa13.39□□□□□ -0.27
NIFKP3-201ENST00000417799 PABPN1Q86U42 306 aaKnown RBP eCLIP13.31□□□□□ -0.28
NIFKP3-201ENST00000417799 IFNLR1Q8IU57 520 aaPredicted RBP13.24□□□□□ -0.29
NIFKP3-201ENST00000417799 STAG3Q9UJ98 1225 aa13.23□□□□□ -0.29
NIFKP3-201ENST00000417799 SP7Q8TDD2 431 aaPredicted RBP13.18□□□□□ -0.3
NIFKP3-201ENST00000417799 AKT1S1Q96B36 256 aa13.12□□□□□ -0.31
NIFKP3-201ENST00000417799 KLHL34Q8N239 644 aa13.1□□□□□ -0.31
NIFKP3-201ENST00000417799 PLCD3Q8N3E9 789 aa13.1□□□□□ -0.31
NIFKP3-201ENST00000417799 MIER1Q8N108 512 aa13.08□□□□□ -0.32
NIFKP3-201ENST00000417799 SPOCK2Q92563 424 aa13.03□□□□□ -0.32
NIFKP3-201ENST00000417799 PLEKHG5O94827 1062 aa12.99□□□□□ -0.33
NIFKP3-201ENST00000417799 PIP4P2Q8N4L2 257 aa12.98□□□□□ -0.33
NIFKP3-201ENST00000417799 SPDYE1Q8NFV5 336 aaPredicted RBP12.98□□□□□ -0.33
NIFKP3-201ENST00000417799 REM2Q8IYK8 340 aaPredicted RBP12.97□□□□□ -0.33
NIFKP3-201ENST00000417799 PKD2Q13563 968 aa12.95□□□□□ -0.34
NIFKP3-201ENST00000417799 SLC24A1O60721 1099 aa12.94□□□□□ -0.34
NIFKP3-201ENST00000417799 ZBTB47Q9UFB7 747 aaPredicted RBP12.92□□□□□ -0.34
NIFKP3-201ENST00000417799 CLEC11AQ9Y240 323 aa12.91□□□□□ -0.34
NIFKP3-201ENST00000417799 FXR2P51116 673 aaKnown RBP eCLIP12.86□□□□□ -0.35
NIFKP3-201ENST00000417799 HAX1O00165 279 aa12.85□□□□□ -0.35
NIFKP3-201ENST00000417799 PRR29P0C7W0 189 aa12.85□□□□□ -0.35
NIFKP3-201ENST00000417799 DCAF8L2P0C7V8 631 aa12.83□□□□□ -0.36
NIFKP3-201ENST00000417799 PITPNM1O00562 1244 aa12.82□□□□□ -0.36
NIFKP3-201ENST00000417799 ECM2O94769 699 aaPredicted RBP12.81□□□□□ -0.36
NIFKP3-201ENST00000417799 CIZ1Q9ULV3 898 aaPredicted RBP12.77□□□□□ -0.37
NIFKP3-201ENST00000417799 CREBZFQ9NS37 354 aa12.76□□□□□ -0.37
NIFKP3-201ENST00000417799 NUBP1P53384 320 aa12.68□□□□□ -0.38
NIFKP3-201ENST00000417799 MNX1P50219 401 aaPredicted RBP12.67□□□□□ -0.38
NIFKP3-201ENST00000417799 RGL2O15211 777 aa12.66□□□□□ -0.38
NIFKP3-201ENST00000417799 EVX2Q03828 476 aa12.66□□□□□ -0.38
NIFKP3-201ENST00000417799 GSE1Q14687 1217 aa12.66□□□□□ -0.38
NIFKP3-201ENST00000417799 TRIM41Q8WV44 630 aa12.65□□□□□ -0.38
NIFKP3-201ENST00000417799 DCAF8Q5TAQ9 597 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms