RNA–Protein interactions for RNA: ENST00000539116.1

LINC02454-201, Transcript of long intergenic non-protein coding RNA 2454, humanhuman

TSL 4 BASIC

Gene LINC02454, Length 589 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02454-201ENST00000539116 AEBP2Q6ZN18 517 aaPredicted RBP24.54■■□□□ 1.52
LINC02454-201ENST00000539116 CHIC1Q5VXU3 224 aa23.48■■□□□ 1.35
LINC02454-201ENST00000539116 SENP3Q9H4L4 574 aaPredicted RBP21.28■■□□□ 1
LINC02454-201ENST00000539116 PHF23Q9BUL5 403 aaPredicted RBP20.81■□□□□ 0.92
LINC02454-201ENST00000539116 FOXD1Q16676 465 aa19.74■□□□□ 0.75
LINC02454-201ENST00000539116 POTEDQ86YR6 584 aa19.37■□□□□ 0.69
LINC02454-201ENST00000539116 PLPPR3Q6T4P5 718 aa19.17■□□□□ 0.66
LINC02454-201ENST00000539116 MSH5O43196 834 aa18.93■□□□□ 0.62
LINC02454-201ENST00000539116 PIAS4Q8N2W9 510 aaPredicted RBP18.36■□□□□ 0.53
LINC02454-201ENST00000539116 ADRA2BP18089 450 aa18.13■□□□□ 0.49
LINC02454-201ENST00000539116 PPP6R1Q9UPN7 881 aa18.12■□□□□ 0.49
LINC02454-201ENST00000539116 PPP4R3CPQ6ZMV5 832 aa16.89■□□□□ 0.29
LINC02454-201ENST00000539116 DMRT2Q9Y5R5 561 aa16.72■□□□□ 0.27
LINC02454-201ENST00000539116 KCNA4P22459 653 aa16.69■□□□□ 0.26
LINC02454-201ENST00000539116 SCAF1Q9H7N4 1312 aaKnown RBP16.66■□□□□ 0.26
LINC02454-201ENST00000539116 CACNB1Q02641 598 aaPredicted RBP16.55■□□□□ 0.24
LINC02454-201ENST00000539116 NCBP3Q53F19 620 aaKnown RBP16.53■□□□□ 0.24
LINC02454-201ENST00000539116 MAPK8IP2Q13387 824 aaPredicted RBP16.52■□□□□ 0.24
LINC02454-201ENST00000539116 CNKSR2Q8WXI2 1034 aa16.39■□□□□ 0.21
LINC02454-201ENST00000539116 NPM3O75607 178 aaKnown RBP16.26■□□□□ 0.19
LINC02454-201ENST00000539116 DCAF8L1A6NGE4 600 aa16.03■□□□□ 0.16
LINC02454-201ENST00000539116 RNF216Q9NWF9 866 aaPredicted RBP16.03■□□□□ 0.16
LINC02454-201ENST00000539116 RNF39Q9H2S5 420 aa15.98■□□□□ 0.15
LINC02454-201ENST00000539116 SLC4A1APQ9BWU0 796 aaKnown RBP15.95■□□□□ 0.14
LINC02454-201ENST00000539116 HOXD11P31277 338 aaPredicted RBP15.91■□□□□ 0.14
LINC02454-201ENST00000539116 C1QBPQ07021 282 aaKnown RBP15.82■□□□□ 0.12
LINC02454-201ENST00000539116 DNAJC5BQ9UF47 199 aa15.8■□□□□ 0.12
LINC02454-201ENST00000539116 EHMT2Q96KQ7 1210 aa15.68■□□□□ 0.1
LINC02454-201ENST00000539116 CSRNP3Q8WYN3 585 aa15.42■□□□□ 0.06
LINC02454-201ENST00000539116 FOXD4L1Q9NU39 408 aa15.36■□□□□ 0.05
LINC02454-201ENST00000539116 ZBTB22O15209 634 aa15.34■□□□□ 0.05
LINC02454-201ENST00000539116 SLC4A2P04920 1241 aa15.29■□□□□ 0.04
LINC02454-201ENST00000539116 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.17■□□□□ 0.02
LINC02454-201ENST00000539116 POTEHQ6S545 545 aa15.11■□□□□ 0.01
LINC02454-201ENST00000539116 MYCNP04198 464 aaPredicted RBP15.05■□□□□ -0
LINC02454-201ENST00000539116 U3KPZ7 1027 aaPredicted RBP14.93□□□□□ -0.02
LINC02454-201ENST00000539116 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.86□□□□□ -0.03
LINC02454-201ENST00000539116 HNRNPUL2Q1KMD3 747 aaKnown RBP14.86□□□□□ -0.03
LINC02454-201ENST00000539116 SAMD1Q6SPF0 538 aaPredicted RBP14.81□□□□□ -0.04
LINC02454-201ENST00000539116 ATXN8OSP0DMR3 200 aa14.8□□□□□ -0.04
LINC02454-201ENST00000539116 DSG3P32926 999 aa14.73□□□□□ -0.05
LINC02454-201ENST00000539116 CAPN15O75808 1086 aa14.69□□□□□ -0.06
LINC02454-201ENST00000539116 APLP2Q06481 763 aa14.68□□□□□ -0.06
LINC02454-201ENST00000539116 SPINK5Q9NQ38 1064 aaPredicted RBP14.56□□□□□ -0.08
LINC02454-201ENST00000539116 ATF5Q9Y2D1 282 aaPredicted RBP14.56□□□□□ -0.08
LINC02454-201ENST00000539116 ZNF219Q9P2Y4 722 aaPredicted RBP14.42□□□□□ -0.1
LINC02454-201ENST00000539116 TRHP20396 242 aaPredicted RBP14.37□□□□□ -0.11
LINC02454-201ENST00000539116 RBM42Q9BTD8 480 aaKnown RBP14.25□□□□□ -0.13
LINC02454-201ENST00000539116 ABCB7O75027 752 aa14.19□□□□□ -0.14
LINC02454-201ENST00000539116 POLA2Q14181 598 aa14.17□□□□□ -0.14
LINC02454-201ENST00000539116 NISCHQ9Y2I1 1504 aa14.1□□□□□ -0.15
LINC02454-201ENST00000539116 CHRDL2Q6WN34 429 aa14.05□□□□□ -0.16
LINC02454-201ENST00000539116 ZBTB12Q9Y330 459 aaPredicted RBP14.02□□□□□ -0.17
LINC02454-201ENST00000539116 FBLN2P98095 1184 aa14.01□□□□□ -0.17
LINC02454-201ENST00000539116 MKRN4PQ13434 485 aaPredicted RBP13.96□□□□□ -0.17
LINC02454-201ENST00000539116 FKBP8Q14318 412 aa13.95□□□□□ -0.18
LINC02454-201ENST00000539116 SP7Q8TDD2 431 aaPredicted RBP13.89□□□□□ -0.19
LINC02454-201ENST00000539116 SPDYE4A6NLX3 237 aa13.77□□□□□ -0.21
LINC02454-201ENST00000539116 AKT1S1Q96B36 256 aa13.72□□□□□ -0.21
LINC02454-201ENST00000539116 OSCARQ8IYS5 282 aa13.7□□□□□ -0.22
LINC02454-201ENST00000539116 SPDYE2BA6NHP3 402 aa13.63□□□□□ -0.23
LINC02454-201ENST00000539116 SPDYE6P0CI01 402 aa13.63□□□□□ -0.23
LINC02454-201ENST00000539116 SPDYE2Q495Y8 402 aa13.63□□□□□ -0.23
LINC02454-201ENST00000539116 ZNF692Q9BU19 519 aaPredicted RBP13.59□□□□□ -0.23
LINC02454-201ENST00000539116 PROM2Q8N271 834 aa13.56□□□□□ -0.24
LINC02454-201ENST00000539116 PIP4P2Q8N4L2 257 aa13.54□□□□□ -0.24
LINC02454-201ENST00000539116 SSUH2Q9Y2M2 353 aa13.53□□□□□ -0.24
LINC02454-201ENST00000539116 HAX1O00165 279 aa13.52□□□□□ -0.25
LINC02454-201ENST00000539116 REM2Q8IYK8 340 aaPredicted RBP13.51□□□□□ -0.25
LINC02454-201ENST00000539116 FBXO3Q9UK99 471 aa13.44□□□□□ -0.26
LINC02454-201ENST00000539116 PABPN1Q86U42 306 aaKnown RBP eCLIP13.41□□□□□ -0.26
LINC02454-201ENST00000539116 FXR2P51116 673 aaKnown RBP eCLIP13.4□□□□□ -0.26
LINC02454-201ENST00000539116 PITPNM1O00562 1244 aa13.33□□□□□ -0.28
LINC02454-201ENST00000539116 STAG3Q9UJ98 1225 aa13.25□□□□□ -0.29
LINC02454-201ENST00000539116 VASPP50552 380 aaPredicted RBP13.23□□□□□ -0.29
LINC02454-201ENST00000539116 SPDYE1Q8NFV5 336 aaPredicted RBP13.18□□□□□ -0.3
LINC02454-201ENST00000539116 EVX2Q03828 476 aa13.11□□□□□ -0.31
LINC02454-201ENST00000539116 CLEC11AQ9Y240 323 aa13.09□□□□□ -0.31
LINC02454-201ENST00000539116 AMER1Q5JTC6 1135 aaPredicted RBP13.06□□□□□ -0.32
LINC02454-201ENST00000539116 PLCD3Q8N3E9 789 aa13.04□□□□□ -0.32
LINC02454-201ENST00000539116 IFNLR1Q8IU57 520 aaPredicted RBP13.03□□□□□ -0.32
LINC02454-201ENST00000539116 PRKAR2AP13861 404 aaKnown RBP13.02□□□□□ -0.33
LINC02454-201ENST00000539116 MIER1Q8N108 512 aa13.02□□□□□ -0.33
LINC02454-201ENST00000539116 PLEKHG5O94827 1062 aa13.01□□□□□ -0.33
LINC02454-201ENST00000539116 PRR29P0C7W0 189 aa13.01□□□□□ -0.33
LINC02454-201ENST00000539116 LHX8Q68G74 356 aa13.01□□□□□ -0.33
LINC02454-201ENST00000539116 C19orf67A6NJJ6 358 aa12.99□□□□□ -0.33
LINC02454-201ENST00000539116 RTN4Q9NQC3 1192 aaKnown RBP12.98□□□□□ -0.33
LINC02454-201ENST00000539116 KLHL34Q8N239 644 aa12.95□□□□□ -0.34
LINC02454-201ENST00000539116 ZBTB47Q9UFB7 747 aaPredicted RBP12.94□□□□□ -0.34
LINC02454-201ENST00000539116 GABBR2O75899 941 aa12.93□□□□□ -0.34
LINC02454-201ENST00000539116 SPOCK2Q92563 424 aa12.88□□□□□ -0.35
LINC02454-201ENST00000539116 CREBZFQ9NS37 354 aa12.86□□□□□ -0.35
LINC02454-201ENST00000539116 CLCN6P51797 869 aa12.79□□□□□ -0.36
LINC02454-201ENST00000539116 MNX1P50219 401 aaPredicted RBP12.75□□□□□ -0.37
LINC02454-201ENST00000539116 CHADLQ6NUI6 762 aa12.73□□□□□ -0.37
LINC02454-201ENST00000539116 NPM1P06748 294 aaKnown RBP eCLIP12.69□□□□□ -0.38
LINC02454-201ENST00000539116 NUBP1P53384 320 aa12.67□□□□□ -0.38
LINC02454-201ENST00000539116 PKD2Q13563 968 aa12.66□□□□□ -0.38
LINC02454-201ENST00000539116 PLSCR2Q9NRY7 297 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms