Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC6.3□□□□□ -1.4
COL4A4P53420 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 FAM186A-204ENST00000543111 8200 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
COL4A4P53420 SLC1A2-201ENST00000278379 11696 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 FO393409.1-201ENST00000399325 1372 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 PARP4P2-201ENST00000446672 3326 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 OR10R3P-201ENST00000361688 942 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 RNA5SP211-201ENST00000365516 117 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC6.3□□□□□ -1.4
COL4A4P53420 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 AC016027.5-201ENST00000427227 210 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC6.3□□□□□ -1.4
COL4A4P53420 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC6.3□□□□□ -1.4
COL4A4P53420 CYCSP6-201ENST00000434498 302 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 AC073850.1-201ENST00000449243 255 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 AC023245.1-201ENST00000468501 517 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 RPL7AP6-201ENST00000477943 801 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 RN7SL184P-201ENST00000488308 297 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC6.3□□□□□ -1.4
COL4A4P53420 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC6.3□□□□□ -1.4
COL4A4P53420 AC004825.1-201ENST00000555068 586 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.3□□□□□ -1.4
COL4A4P53420 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC6.3□□□□□ -1.4
COL4A4P53420 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC6.3□□□□□ -1.4
COL4A4P53420 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6.3□□□□□ -1.4
COL4A4P53420 ATF7-202ENST00000456903 5218 ntAPPRIS P2 TSL 5 BASIC6.29□□□□□ -1.4
COL4A4P53420 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL4A4P53420 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL4A4P53420 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL4A4P53420 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL4A4P53420 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL4A4P53420 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL4A4P53420 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL4A4P53420 AL355377.1-201ENST00000621125 1653 ntBASIC6.29□□□□□ -1.4
COL4A4P53420 LINC00261-202ENST00000564492 4912 ntTSL 3 BASIC6.29□□□□□ -1.4
COL4A4P53420 FBXL21-201ENST00000297158 1305 ntBASIC6.29□□□□□ -1.4
COL4A4P53420 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.29□□□□□ -1.4
COL4A4P53420 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL4A4P53420 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC6.29□□□□□ -1.4
COL4A4P53420 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL4A4P53420 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL4A4P53420 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.29□□□□□ -1.4
COL4A4P53420 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
COL4A4P53420 RN7SKP29-201ENST00000410957 272 ntBASIC6.29□□□□□ -1.4
COL4A4P53420 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC6.29□□□□□ -1.4
COL4A4P53420 FAR2P1-206ENST00000449736 709 ntBASIC6.29□□□□□ -1.4
COL4A4P53420 RPL7L1P3-201ENST00000455249 689 ntBASIC6.29□□□□□ -1.4
COL4A4P53420 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC6.29□□□□□ -1.4
COL4A4P53420 RN7SL583P-201ENST00000475692 287 ntBASIC6.29□□□□□ -1.4
COL4A4P53420 RPS4XP1-201ENST00000482189 787 ntBASIC6.29□□□□□ -1.4
COL4A4P53420 RPL32P33-201ENST00000487023 394 ntBASIC6.29□□□□□ -1.4
COL4A4P53420 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC6.29□□□□□ -1.4
COL4A4P53420 CDC42P3-201ENST00000518493 633 ntBASIC6.29□□□□□ -1.4
COL4A4P53420 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC6.29□□□□□ -1.4
COL4A4P53420 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC6.29□□□□□ -1.4
COL4A4P53420 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.29□□□□□ -1.4
COL4A4P53420 AC007494.1-201ENST00000562293 760 ntBASIC6.29□□□□□ -1.4
COL4A4P53420 RN7SL708P-201ENST00000580952 299 ntBASIC6.29□□□□□ -1.4
COL4A4P53420 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.29□□□□□ -1.4
COL4A4P53420 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC6.29□□□□□ -1.4
COL4A4P53420 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
COL4A4P53420 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
COL4A4P53420 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL4A4P53420 AC114786.1-201ENST00000512892 1415 ntBASIC6.29□□□□□ -1.4
COL4A4P53420 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC6.29□□□□□ -1.4
COL4A4P53420 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL4A4P53420 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
COL4A4P53420 NYAP2-202ENST00000636099 5461 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
COL4A4P53420 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
COL4A4P53420 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
COL4A4P53420 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC6.28□□□□□ -1.4
COL4A4P53420 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 AL589993.1-201ENST00000407450 2524 ntBASIC6.28□□□□□ -1.4
COL4A4P53420 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC6.28□□□□□ -1.4
COL4A4P53420 DOCK11P1-201ENST00000553480 5932 ntBASIC6.28□□□□□ -1.4
COL4A4P53420 PLEKHG4B-204ENST00000637938 12612 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
COL4A4P53420 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC6.28□□□□□ -1.4
COL4A4P53420 PCDH19-201ENST00000255531 7937 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC6.28□□□□□ -1.4
COL4A4P53420 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 KIF1B-202ENST00000377081 8746 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 AC005225.5-201ENST00000623547 2225 ntBASIC6.28□□□□□ -1.4
COL4A4P53420 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC6.28□□□□□ -1.4
COL4A4P53420 AL121768.1-201ENST00000613917 2544 ntBASIC6.28□□□□□ -1.4
COL4A4P53420 RASGEF1B-203ENST00000436139 6323 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 MIR550A3-201ENST00000390735 95 ntBASIC6.28□□□□□ -1.4
COL4A4P53420 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 RPA2P2-201ENST00000419698 796 ntBASIC6.28□□□□□ -1.4
COL4A4P53420 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC6.28□□□□□ -1.4
COL4A4P53420 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 148.1 ms