RNA–Protein interactions for RNA: ENST00000405010.7

HDAC9-202, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best) BASIC

Gene HDAC9, Length 4,239 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-202ENST00000405010 NISCHQ9Y2I1 1504 aa12.86□□□□□ -0.35
HDAC9-202ENST00000405010 SUPT5HO00267 1087 aaKnown RBP12.27□□□□□ -0.44
HDAC9-202ENST00000405010 SHROOM4Q9ULL8 1493 aa12.11□□□□□ -0.47
HDAC9-202ENST00000405010 PCGF6Q9BYE7 350 aa12.04□□□□□ -0.48
HDAC9-202ENST00000405010 DCAF8L2P0C7V8 631 aa12□□□□□ -0.49
HDAC9-202ENST00000405010 HRCP23327 699 aa11.96□□□□□ -0.49
HDAC9-202ENST00000405010 PELP1Q8IZL8 1130 aaKnown RBP11.94□□□□□ -0.5
HDAC9-202ENST00000405010 PPARGC1BQ86YN6 1023 aaKnown RBP11.73□□□□□ -0.53
HDAC9-202ENST00000405010 ZEB1P37275 1124 aaPredicted RBP11.65□□□□□ -0.54
HDAC9-202ENST00000405010 MYT1Q01538 1121 aa11.6□□□□□ -0.55
HDAC9-202ENST00000405010 EHMT2Q96KQ7 1210 aa11.57□□□□□ -0.56
HDAC9-202ENST00000405010 CHIC1Q5VXU3 224 aa11.57□□□□□ -0.56
HDAC9-202ENST00000405010 TRIM26Q12899 539 aaPredicted RBP11.54□□□□□ -0.56
HDAC9-202ENST00000405010 CENPBP07199 599 aaPredicted RBP11.52□□□□□ -0.56
HDAC9-202ENST00000405010 FAM9AQ8IZU1 332 aaPredicted RBP11.46□□□□□ -0.57
HDAC9-202ENST00000405010 LOC105371045A0A1W2PR82 267 aa11.45□□□□□ -0.58
HDAC9-202ENST00000405010 CCER1Q8TC90 406 aaPredicted RBP11.39□□□□□ -0.59
HDAC9-202ENST00000405010 TRIM41Q8WV44 630 aa11.32□□□□□ -0.6
HDAC9-202ENST00000405010 TTBK1Q5TCY1 1321 aaPredicted RBP11.28□□□□□ -0.6
HDAC9-202ENST00000405010 YTHDC1Q96MU7 727 aaKnown RBP11.26□□□□□ -0.61
HDAC9-202ENST00000405010 SCAF1Q9H7N4 1312 aaKnown RBP11.2□□□□□ -0.62
HDAC9-202ENST00000405010 GTF3C3Q9Y5Q9 886 aa11.19□□□□□ -0.62
HDAC9-202ENST00000405010 ACIN1Q9UKV3 1341 aaKnown RBP11.16□□□□□ -0.62
HDAC9-202ENST00000405010 DIEXFQ68CQ4 756 aaKnown RBP11.15□□□□□ -0.62
HDAC9-202ENST00000405010 MYO15BQ96JP2 1530 aa11.15□□□□□ -0.63
HDAC9-202ENST00000405010 DCAF1Q9Y4B6 1507 aa11.15□□□□□ -0.63
HDAC9-202ENST00000405010 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.12□□□□□ -0.63
HDAC9-202ENST00000405010 APLP2Q06481 763 aa11.05□□□□□ -0.64
HDAC9-202ENST00000405010 NEUROD1Q13562 356 aa11.03□□□□□ -0.64
HDAC9-202ENST00000405010 UBTFP17480 764 aaKnown RBP10.94□□□□□ -0.66
HDAC9-202ENST00000405010 ERICH6Q7L0X2 663 aa10.94□□□□□ -0.66
HDAC9-202ENST00000405010 NEFLP07196 543 aa10.89□□□□□ -0.67
HDAC9-202ENST00000405010 CCDC180Q9P1Z9 1646 aa10.88□□□□□ -0.67
HDAC9-202ENST00000405010 ZNF316A6NFI3 1004 aaPredicted RBP10.88□□□□□ -0.67
HDAC9-202ENST00000405010 HNRNPUL2Q1KMD3 747 aaKnown RBP10.86□□□□□ -0.67
HDAC9-202ENST00000405010 RANGAP1P46060 587 aaPredicted RBP10.85□□□□□ -0.67
HDAC9-202ENST00000405010 ZCCHC6Q5VYS8 1495 aaKnown RBP10.82□□□□□ -0.68
HDAC9-202ENST00000405010 BCANQ96GW7 911 aa10.7□□□□□ -0.7
HDAC9-202ENST00000405010 MIER1Q8N108 512 aa10.68□□□□□ -0.7
HDAC9-202ENST00000405010 CLSPNQ9HAW4 1339 aa10.65□□□□□ -0.7
HDAC9-202ENST00000405010 ITGAEP38570 1179 aa10.61□□□□□ -0.71
HDAC9-202ENST00000405010 ANP32EQ9BTT0 268 aa10.57□□□□□ -0.72
HDAC9-202ENST00000405010 FKBP8Q14318 412 aa10.52□□□□□ -0.72
HDAC9-202ENST00000405010 ATP1B4Q9UN42 357 aaPredicted RBP10.51□□□□□ -0.73
HDAC9-202ENST00000405010 CSRNP3Q8WYN3 585 aa10.5□□□□□ -0.73
HDAC9-202ENST00000405010 BCL11AQ9H165 835 aa10.5□□□□□ -0.73
HDAC9-202ENST00000405010 CDK11AQ9UQ88 783 aaPredicted RBP10.48□□□□□ -0.73
HDAC9-202ENST00000405010 SUPT16HQ9Y5B9 1047 aaKnown RBP10.47□□□□□ -0.73
HDAC9-202ENST00000405010 RTL5Q5HYW3 569 aaPredicted RBP10.45□□□□□ -0.74
HDAC9-202ENST00000405010 RSF1Q96T23 1441 aaPredicted RBP10.44□□□□□ -0.74
HDAC9-202ENST00000405010 ANP32CO43423 234 aa10.44□□□□□ -0.74
HDAC9-202ENST00000405010 CEP162Q5TB80 1403 aa10.39□□□□□ -0.75
HDAC9-202ENST00000405010 DDX10Q13206 875 aaKnown RBP10.37□□□□□ -0.75
HDAC9-202ENST00000405010 TSHZ2Q9NRE2 1034 aa10.37□□□□□ -0.75
HDAC9-202ENST00000405010 TRIM52Q96A61 297 aa10.36□□□□□ -0.75
HDAC9-202ENST00000405010 SCRIBQ14160 1630 aa10.36□□□□□ -0.75
HDAC9-202ENST00000405010 ABCC9O60706 1549 aa10.35□□□□□ -0.75
HDAC9-202ENST00000405010 MYT1LQ9UL68 1186 aa10.33□□□□□ -0.76
HDAC9-202ENST00000405010 FAM50AQ14320 339 aaKnown RBP10.33□□□□□ -0.76
HDAC9-202ENST00000405010 CNGB1Q14028 1251 aaPredicted RBP10.31□□□□□ -0.76
HDAC9-202ENST00000405010 DAXXQ9UER7 740 aaPredicted RBP10.29□□□□□ -0.76
HDAC9-202ENST00000405010 TNIKQ9UKE5 1360 aa10.29□□□□□ -0.76
HDAC9-202ENST00000405010 HNRNPUQ00839 825 aaKnown RBP eCLIP10.28□□□□□ -0.76
HDAC9-202ENST00000405010 RB1CC1Q8TDY2 1594 aa10.28□□□□□ -0.76
HDAC9-202ENST00000405010 POLR3GLQ9BT43 218 aa10.28□□□□□ -0.76
HDAC9-202ENST00000405010 RBM19Q9Y4C8 960 aaKnown RBP10.27□□□□□ -0.77
HDAC9-202ENST00000405010 NBR1Q14596 966 aa10.26□□□□□ -0.77
HDAC9-202ENST00000405010 CLIP1P30622 1438 aa10.26□□□□□ -0.77
HDAC9-202ENST00000405010 ANP32AP39687 249 aaKnown RBP10.25□□□□□ -0.77
HDAC9-202ENST00000405010 IRX6P78412 446 aaPredicted RBP10.25□□□□□ -0.77
HDAC9-202ENST00000405010 EEA1Q15075 1411 aa10.22□□□□□ -0.77
HDAC9-202ENST00000405010 GOLGA3Q08378 1498 aa10.22□□□□□ -0.77
HDAC9-202ENST00000405010 HIRIP3Q9BW71 556 aaPredicted RBP10.21□□□□□ -0.77
HDAC9-202ENST00000405010 WRNQ14191 1432 aaPredicted RBP eCLIP10.17□□□□□ -0.78
HDAC9-202ENST00000405010 NPM2Q86SE8 214 aaKnown RBP10.16□□□□□ -0.78
HDAC9-202ENST00000405010 TONSLQ96HA7 1378 aa10.15□□□□□ -0.78
HDAC9-202ENST00000405010 SOGA1O94964 1423 aa10.15□□□□□ -0.78
HDAC9-202ENST00000405010 ZBTB47Q9UFB7 747 aaPredicted RBP10.15□□□□□ -0.78
HDAC9-202ENST00000405010 EIF5BO60841 1220 aaKnown RBP10.15□□□□□ -0.79
HDAC9-202ENST00000405010 FAM9BQ8IZU0 186 aa10.14□□□□□ -0.79
HDAC9-202ENST00000405010 DEKP35659 375 aaKnown RBP10.13□□□□□ -0.79
HDAC9-202ENST00000405010 CECR2Q9BXF3 1484 aa10.12□□□□□ -0.79
HDAC9-202ENST00000405010 CCDC136Q96JN2 1154 aa10.11□□□□□ -0.79
HDAC9-202ENST00000405010 KCNH8Q96L42 1107 aa10.11□□□□□ -0.79
HDAC9-202ENST00000405010 CEP164Q9UPV0 1460 aa10.1□□□□□ -0.79
HDAC9-202ENST00000405010 PABPN1Q86U42 306 aaKnown RBP eCLIP10.09□□□□□ -0.79
HDAC9-202ENST00000405010 CCDC88BA6NC98 1476 aa10.09□□□□□ -0.79
HDAC9-202ENST00000405010 PPP4R2Q9NY27 417 aa10.08□□□□□ -0.8
HDAC9-202ENST00000405010 NOP58Q9Y2X3 529 aaKnown RBP10.08□□□□□ -0.8
HDAC9-202ENST00000405010 SIN3AQ96ST3 1273 aa10.07□□□□□ -0.8
HDAC9-202ENST00000405010 VPS8Q8N3P4 1428 aa10.07□□□□□ -0.8
HDAC9-202ENST00000405010 MRS2Q9HD23 443 aa10.07□□□□□ -0.8
HDAC9-202ENST00000405010 CCER2I3L3R5 266 aa10.06□□□□□ -0.8
HDAC9-202ENST00000405010 P3H3Q8IVL6 736 aa10.06□□□□□ -0.8
HDAC9-202ENST00000405010 ABCC8Q09428 1581 aa10.06□□□□□ -0.8
HDAC9-202ENST00000405010 B4GALNT3Q6L9W6 998 aa10.05□□□□□ -0.8
HDAC9-202ENST00000405010 MROH2BQ7Z745 1585 aa10.05□□□□□ -0.8
HDAC9-202ENST00000405010 RTN4Q9NQC3 1192 aaKnown RBP10.04□□□□□ -0.8
HDAC9-202ENST00000405010 DHX57Q6P158 1386 aaKnown RBP10.03□□□□□ -0.8
HDAC9-202ENST00000405010 ZNF326Q5BKZ1 582 aaKnown RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms