Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AL953862.2-201ENST00000603089 820 ntBASIC6.15□□□□□ -1.42
VMP1Q96GC9 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC6.15□□□□□ -1.42
VMP1Q96GC9 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC6.15□□□□□ -1.42
VMP1Q96GC9 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC6.15□□□□□ -1.42
VMP1Q96GC9 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC6.15□□□□□ -1.42
VMP1Q96GC9 AC015819.1-201ENST00000613588 663 ntBASIC6.15□□□□□ -1.42
VMP1Q96GC9 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC6.15□□□□□ -1.42
VMP1Q96GC9 AC005277.2-201ENST00000617898 390 ntBASIC6.15□□□□□ -1.42
VMP1Q96GC9 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC6.15□□□□□ -1.42
VMP1Q96GC9 RACK1-235ENST00000626067 564 ntTSL 2 BASIC6.15□□□□□ -1.42
VMP1Q96GC9 OR7A1P-202ENST00000641542 1158 ntBASIC6.15□□□□□ -1.42
VMP1Q96GC9 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC6.15□□□□□ -1.42
VMP1Q96GC9 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
VMP1Q96GC9 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
VMP1Q96GC9 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
VMP1Q96GC9 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
VMP1Q96GC9 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
VMP1Q96GC9 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.15□□□□□ -1.43
VMP1Q96GC9 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.15□□□□□ -1.43
VMP1Q96GC9 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
VMP1Q96GC9 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC6.15□□□□□ -1.43
VMP1Q96GC9 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.15□□□□□ -1.43
VMP1Q96GC9 SAMMSON-213ENST00000641336 1521 ntBASIC6.15□□□□□ -1.43
VMP1Q96GC9 AC027228.2-201ENST00000567141 2154 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 AC007012.2-201ENST00000623206 1676 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VMP1Q96GC9 AC093671.1-201ENST00000624981 2929 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VMP1Q96GC9 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
VMP1Q96GC9 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 RNA5SP188-201ENST00000362916 129 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 RNA5SP85-201ENST00000365378 119 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 LCN1P2-201ENST00000372030 223 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 MRPS6P2-201ENST00000381143 370 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 AL360271.1-201ENST00000395679 510 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 VIM2P-201ENST00000402383 1294 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 RNA5SP115-201ENST00000411160 107 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 AC128677.1-201ENST00000436016 442 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 AC245291.3-201ENST00000443400 292 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 CCNJP1-201ENST00000450600 1149 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 AC099670.1-201ENST00000455141 783 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 RBMY2HP-201ENST00000457961 720 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VMP1Q96GC9 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VMP1Q96GC9 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VMP1Q96GC9 AC008429.2-201ENST00000523057 864 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 AC100768.2-201ENST00000534068 683 ntTSL 3 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VMP1Q96GC9 AC092718.4-201ENST00000566639 716 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 WBP1LP11-201ENST00000586141 328 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 GAPDHP41-201ENST00000613707 975 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
VMP1Q96GC9 AC243960.7-201ENST00000623532 707 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 AC018692.2-201ENST00000624130 348 ntBASIC6.14□□□□□ -1.43
VMP1Q96GC9 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VMP1Q96GC9 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
VMP1Q96GC9 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VMP1Q96GC9 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC6.14□□□□□ -1.43
VMP1Q96GC9 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
VMP1Q96GC9 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VMP1Q96GC9 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VMP1Q96GC9 AL359976.1-201ENST00000418655 3528 ntBASIC6.13□□□□□ -1.43
VMP1Q96GC9 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
VMP1Q96GC9 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
VMP1Q96GC9 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
VMP1Q96GC9 AL606537.1-201ENST00000607258 2011 ntBASIC6.13□□□□□ -1.43
VMP1Q96GC9 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
VMP1Q96GC9 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.13□□□□□ -1.43
VMP1Q96GC9 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC6.13□□□□□ -1.43
VMP1Q96GC9 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC6.13□□□□□ -1.43
VMP1Q96GC9 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
VMP1Q96GC9 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
VMP1Q96GC9 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
VMP1Q96GC9 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
VMP1Q96GC9 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
VMP1Q96GC9 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
VMP1Q96GC9 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
VMP1Q96GC9 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC6.13□□□□□ -1.43
VMP1Q96GC9 RN7SKP38-201ENST00000410782 309 ntBASIC6.13□□□□□ -1.43
VMP1Q96GC9 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC6.13□□□□□ -1.43
VMP1Q96GC9 CASKP1-201ENST00000412870 582 ntBASIC6.13□□□□□ -1.43
VMP1Q96GC9 TMA16P2-201ENST00000413187 601 ntBASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms