RNA–Protein interactions for RNA: ENST00000511653.1

COPS4-209, Transcript of COP9 signalosome subunit 4, humanhuman

TSL 1 (best) BASIC

Gene COPS4, Length 1,695 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4-209ENST00000511653 AEBP2Q6ZN18 517 aaPredicted RBP22.07■■□□□ 1.12
COPS4-209ENST00000511653 CHIC1Q5VXU3 224 aa21.82■■□□□ 1.08
COPS4-209ENST00000511653 PHF23Q9BUL5 403 aaPredicted RBP19.37■□□□□ 0.69
COPS4-209ENST00000511653 SENP3Q9H4L4 574 aaPredicted RBP18.42■□□□□ 0.54
COPS4-209ENST00000511653 PLPPR3Q6T4P5 718 aa17.82■□□□□ 0.44
COPS4-209ENST00000511653 FOXD1Q16676 465 aa17.21■□□□□ 0.35
COPS4-209ENST00000511653 PPP6R1Q9UPN7 881 aa16.98■□□□□ 0.31
COPS4-209ENST00000511653 ADRA2BP18089 450 aa16.95■□□□□ 0.3
COPS4-209ENST00000511653 NISCHQ9Y2I1 1504 aa16.88■□□□□ 0.29
COPS4-209ENST00000511653 PIAS4Q8N2W9 510 aaPredicted RBP16.26■□□□□ 0.19
COPS4-209ENST00000511653 KCNA4P22459 653 aa16.04■□□□□ 0.16
COPS4-209ENST00000511653 PPP4R3CPQ6ZMV5 832 aa15.84■□□□□ 0.13
COPS4-209ENST00000511653 MSH5O43196 834 aa15.51■□□□□ 0.07
COPS4-209ENST00000511653 EHMT2Q96KQ7 1210 aa15.39■□□□□ 0.05
COPS4-209ENST00000511653 NCBP3Q53F19 620 aaKnown RBP15.38■□□□□ 0.05
COPS4-209ENST00000511653 NPM3O75607 178 aaKnown RBP15.36■□□□□ 0.05
COPS4-209ENST00000511653 MAPK8IP2Q13387 824 aaPredicted RBP15.3■□□□□ 0.04
COPS4-209ENST00000511653 ABCC9O60706 1549 aa15.29■□□□□ 0.04
COPS4-209ENST00000511653 SLC4A1APQ9BWU0 796 aaKnown RBP15.24■□□□□ 0.03
COPS4-209ENST00000511653 CNKSR2Q8WXI2 1034 aa15.22■□□□□ 0.03
COPS4-209ENST00000511653 CCDC180Q9P1Z9 1646 aa15.22■□□□□ 0.03
COPS4-209ENST00000511653 SCAF1Q9H7N4 1312 aaKnown RBP15.22■□□□□ 0.03
COPS4-209ENST00000511653 CSRNP3Q8WYN3 585 aa15.04■□□□□ -0
COPS4-209ENST00000511653 ZBTB22O15209 634 aa14.84□□□□□ -0.03
COPS4-209ENST00000511653 DMRT2Q9Y5R5 561 aa14.84□□□□□ -0.03
COPS4-209ENST00000511653 RNF216Q9NWF9 866 aaPredicted RBP14.83□□□□□ -0.04
COPS4-209ENST00000511653 HOXD11P31277 338 aaPredicted RBP14.7□□□□□ -0.06
COPS4-209ENST00000511653 DNAJC5BQ9UF47 199 aa14.7□□□□□ -0.06
COPS4-209ENST00000511653 FOXD4L1Q9NU39 408 aa14.51□□□□□ -0.09
COPS4-209ENST00000511653 RB1CC1Q8TDY2 1594 aa14.49□□□□□ -0.09
COPS4-209ENST00000511653 SLC4A2P04920 1241 aa14.46□□□□□ -0.1
COPS4-209ENST00000511653 NACADO15069 1562 aa14.36□□□□□ -0.11
COPS4-209ENST00000511653 UNC13AQ9UPW8 1703 aa14.29□□□□□ -0.12
COPS4-209ENST00000511653 DCAF8L2P0C7V8 631 aa14.2□□□□□ -0.14
COPS4-209ENST00000511653 DCAF8L1A6NGE4 600 aa14.18□□□□□ -0.14
COPS4-209ENST00000511653 PABPN1Q86U42 306 aaKnown RBP eCLIP14.18□□□□□ -0.14
COPS4-209ENST00000511653 BICRAQ9NZM4 1560 aa14.14□□□□□ -0.15
COPS4-209ENST00000511653 MYO15BQ96JP2 1530 aa14.12□□□□□ -0.15
COPS4-209ENST00000511653 MYCNP04198 464 aaPredicted RBP14.07□□□□□ -0.16
COPS4-209ENST00000511653 ZCCHC6Q5VYS8 1495 aaKnown RBP13.99□□□□□ -0.17
COPS4-209ENST00000511653 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.96□□□□□ -0.17
COPS4-209ENST00000511653 DCAF1Q9Y4B6 1507 aa13.92□□□□□ -0.18
COPS4-209ENST00000511653 ATF5Q9Y2D1 282 aaPredicted RBP13.89□□□□□ -0.19
COPS4-209ENST00000511653 U3KPZ7 1027 aaPredicted RBP13.89□□□□□ -0.19
COPS4-209ENST00000511653 ATXN8OSP0DMR3 200 aa13.88□□□□□ -0.19
COPS4-209ENST00000511653 SCRIBQ14160 1630 aa13.88□□□□□ -0.19
COPS4-209ENST00000511653 SHROOM4Q9ULL8 1493 aa13.85□□□□□ -0.19
COPS4-209ENST00000511653 CC2D2AQ9P2K1 1620 aa13.83□□□□□ -0.2
COPS4-209ENST00000511653 EIF4G1Q04637 1599 aaKnown RBP13.77□□□□□ -0.21
COPS4-209ENST00000511653 CECR2Q9BXF3 1484 aa13.76□□□□□ -0.21
COPS4-209ENST00000511653 SAMD1Q6SPF0 538 aaPredicted RBP13.64□□□□□ -0.23
COPS4-209ENST00000511653 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.6□□□□□ -0.23
COPS4-209ENST00000511653 HNRNPUL2Q1KMD3 747 aaKnown RBP13.6□□□□□ -0.23
COPS4-209ENST00000511653 POTEDQ86YR6 584 aa13.55□□□□□ -0.24
COPS4-209ENST00000511653 FKBP8Q14318 412 aa13.51□□□□□ -0.25
COPS4-209ENST00000511653 ZNF219Q9P2Y4 722 aaPredicted RBP13.45□□□□□ -0.26
COPS4-209ENST00000511653 RNF39Q9H2S5 420 aa13.44□□□□□ -0.26
COPS4-209ENST00000511653 SPINK5Q9NQ38 1064 aaPredicted RBP13.44□□□□□ -0.26
COPS4-209ENST00000511653 TRHP20396 242 aaPredicted RBP13.31□□□□□ -0.28
COPS4-209ENST00000511653 APLP2Q06481 763 aa13.31□□□□□ -0.28
COPS4-209ENST00000511653 MKRN4PQ13434 485 aaPredicted RBP13.26□□□□□ -0.29
COPS4-209ENST00000511653 NCAPD3P42695 1498 aa13.24□□□□□ -0.29
COPS4-209ENST00000511653 CAPN15O75808 1086 aa13.24□□□□□ -0.29
COPS4-209ENST00000511653 DNAJC5Q9H3Z4 198 aa13.24□□□□□ -0.29
COPS4-209ENST00000511653 SMARCA4P51532 1647 aa13.22□□□□□ -0.29
COPS4-209ENST00000511653 ATAD2BQ9ULI0 1458 aa13.21□□□□□ -0.29
COPS4-209ENST00000511653 C1QBPQ07021 282 aaKnown RBP13.21□□□□□ -0.3
COPS4-209ENST00000511653 POLA2Q14181 598 aa13.19□□□□□ -0.3
COPS4-209ENST00000511653 HMGXB3Q12766 1538 aa13.17□□□□□ -0.3
COPS4-209ENST00000511653 CUX2O14529 1486 aa13.17□□□□□ -0.3
COPS4-209ENST00000511653 ERCC6Q03468 1493 aa13.17□□□□□ -0.3
COPS4-209ENST00000511653 SMARCA2P51531 1590 aa13.16□□□□□ -0.3
COPS4-209ENST00000511653 NESP48681 1621 aa13.13□□□□□ -0.31
COPS4-209ENST00000511653 ABCB7O75027 752 aa13.12□□□□□ -0.31
COPS4-209ENST00000511653 RTN4Q9NQC3 1192 aaKnown RBP13.11□□□□□ -0.31
COPS4-209ENST00000511653 BAZ1AQ9NRL2 1556 aaPredicted RBP13.1□□□□□ -0.31
COPS4-209ENST00000511653 PEG3Q9GZU2 1588 aa13.08□□□□□ -0.32
COPS4-209ENST00000511653 BAZ1BQ9UIG0 1483 aaKnown RBP13.07□□□□□ -0.32
COPS4-209ENST00000511653 THOC2Q8NI27 1593 aaKnown RBP13.05□□□□□ -0.32
COPS4-209ENST00000511653 SPDYE4A6NLX3 237 aa13.04□□□□□ -0.32
COPS4-209ENST00000511653 MROH2BQ7Z745 1585 aa13.03□□□□□ -0.32
COPS4-209ENST00000511653 KIF21AQ7Z4S6 1674 aa13.01□□□□□ -0.33
COPS4-209ENST00000511653 FBLN2P98095 1184 aa12.99□□□□□ -0.33
COPS4-209ENST00000511653 LAMC3Q9Y6N6 1575 aa12.99□□□□□ -0.33
COPS4-209ENST00000511653 DSG3P32926 999 aa12.96□□□□□ -0.33
COPS4-209ENST00000511653 AMER1Q5JTC6 1135 aaPredicted RBP12.93□□□□□ -0.34
COPS4-209ENST00000511653 PROM2Q8N271 834 aa12.92□□□□□ -0.34
COPS4-209ENST00000511653 WIZO95785 1651 aa12.89□□□□□ -0.35
COPS4-209ENST00000511653 PDS5BQ9NTI5 1447 aa12.87□□□□□ -0.35
COPS4-209ENST00000511653 CADPSQ9ULU8 1353 aa12.82□□□□□ -0.36
COPS4-209ENST00000511653 WDR62O43379 1518 aa12.8□□□□□ -0.36
COPS4-209ENST00000511653 MRC2Q9UBG0 1479 aa12.8□□□□□ -0.36
COPS4-209ENST00000511653 ZBTB12Q9Y330 459 aaPredicted RBP12.8□□□□□ -0.36
COPS4-209ENST00000511653 OSCARQ8IYS5 282 aa12.76□□□□□ -0.37
COPS4-209ENST00000511653 CACNB1Q02641 598 aaPredicted RBP12.74□□□□□ -0.37
COPS4-209ENST00000511653 CEP164Q9UPV0 1460 aa12.73□□□□□ -0.37
COPS4-209ENST00000511653 FBXO3Q9UK99 471 aa12.73□□□□□ -0.37
COPS4-209ENST00000511653 FANCD2Q9BXW9 1451 aa12.71□□□□□ -0.37
COPS4-209ENST00000511653 TOP2AP11388 1531 aaKnown RBP12.69□□□□□ -0.38
COPS4-209ENST00000511653 RSF1Q96T23 1441 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms