Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC016583.1-201ENST00000624221 2431 ntBASIC5.68□□□□□ -1.5
VPS13AQ96RL7 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 WWC2-205ENST00000504005 5247 ntTSL 2 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 CYCSP6-201ENST00000434498 302 ntBASIC5.67□□□□□ -1.5
VPS13AQ96RL7 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 RBM22P12-201ENST00000567098 1255 ntBASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AC000068.2-201ENST00000608816 460 ntBASIC5.67□□□□□ -1.5
VPS13AQ96RL7 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 CUL4A-212ENST00000617546 5666 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 IGFN1-202ENST00000335211 11810 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 SHTN1-207ENST00000615301 6730 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 COL25A1-209ENST00000622134 4819 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 PIEZO2-201ENST00000302079 9356 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 DCAF7-205ENST00000614556 6340 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 ZNF250-201ENST00000292579 6364 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 SNORA17.1-201ENST00000362945 126 ntBASIC5.67□□□□□ -1.5
VPS13AQ96RL7 TPT1-204ENST00000379060 764 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 MRPS21P7-201ENST00000566937 238 ntBASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AL353662.3-201ENST00000625131 237 ntBASIC5.67□□□□□ -1.5
VPS13AQ96RL7 SAMMSON-209ENST00000641222 1100 ntBASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AC025809.2-201ENST00000625085 1802 ntBASIC5.67□□□□□ -1.5
VPS13AQ96RL7 PIK3C2B-204ENST00000424712 7522 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 GREB1L-201ENST00000269218 5600 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AC096921.2-201ENST00000561507 1916 ntBASIC5.67□□□□□ -1.5
VPS13AQ96RL7 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AC135068.1-201ENST00000332663 1084 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AC087672.1-201ENST00000479876 766 ntBASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 MTOR-201ENST00000361445 8677 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.67□□□□□ -1.5
VPS13AQ96RL7 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 AC073916.1-201ENST00000545095 130 ntBASIC5.66□□□□□ -1.5
VPS13AQ96RL7 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 MYO10-201ENST00000274203 11456 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 FKBP14-201ENST00000222803 4960 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 EFHC1-201ENST00000371068 6987 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 LTBP1-201ENST00000402934 4948 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 RMST-210ENST00000640149 2844 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 RNU1-77P-201ENST00000390868 162 ntBASIC5.66□□□□□ -1.5
VPS13AQ96RL7 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 RPS27AP3-201ENST00000453803 454 ntBASIC5.66□□□□□ -1.5
VPS13AQ96RL7 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 AP000919.1-201ENST00000582850 985 ntBASIC5.66□□□□□ -1.5
VPS13AQ96RL7 AC087283.1-201ENST00000604029 1074 ntBASIC5.66□□□□□ -1.5
VPS13AQ96RL7 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 KIRREL1-203ENST00000368172 6870 ntTSL 2 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 PLAC4-201ENST00000623119 5588 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 GIGYF2-201ENST00000373563 5847 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 DAPK2-213ENST00000612884 8086 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 CACNA1C-202ENST00000335762 6968 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
VPS13AQ96RL7 FBN2-208ENST00000619499 10154 ntTSL 5 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms