RNA–Protein interactions for RNA: ENST00000622134.4

COL25A1-209, Transcript of collagen type XXV alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL25A1, Length 4,819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1-209ENST00000622134 DCAF8L2P0C7V8 631 aa18.48■□□□□ 0.55
COL25A1-209ENST00000622134 NISCHQ9Y2I1 1504 aa18.26■□□□□ 0.51
COL25A1-209ENST00000622134 PELP1Q8IZL8 1130 aaKnown RBP17.04■□□□□ 0.32
COL25A1-209ENST00000622134 SUPT5HO00267 1087 aaKnown RBP16.92■□□□□ 0.3
COL25A1-209ENST00000622134 MYT1Q01538 1121 aa16.91■□□□□ 0.3
COL25A1-209ENST00000622134 FAM9AQ8IZU1 332 aaPredicted RBP16.88■□□□□ 0.29
COL25A1-209ENST00000622134 SHROOM4Q9ULL8 1493 aa16.76■□□□□ 0.27
COL25A1-209ENST00000622134 APLP2Q06481 763 aa16.43■□□□□ 0.22
COL25A1-209ENST00000622134 CENPBP07199 599 aaPredicted RBP16.14■□□□□ 0.17
COL25A1-209ENST00000622134 ZEB1P37275 1124 aaPredicted RBP16.11■□□□□ 0.17
COL25A1-209ENST00000622134 PCGF6Q9BYE7 350 aa16.09■□□□□ 0.17
COL25A1-209ENST00000622134 ABCC9O60706 1549 aa16.04■□□□□ 0.16
COL25A1-209ENST00000622134 EHMT2Q96KQ7 1210 aa16.01■□□□□ 0.15
COL25A1-209ENST00000622134 HRCP23327 699 aa15.98■□□□□ 0.15
COL25A1-209ENST00000622134 TRIM41Q8WV44 630 aa15.94■□□□□ 0.14
COL25A1-209ENST00000622134 ATP1B4Q9UN42 357 aaPredicted RBP15.82■□□□□ 0.12
COL25A1-209ENST00000622134 UBTFP17480 764 aaKnown RBP15.78■□□□□ 0.12
COL25A1-209ENST00000622134 ERICH6Q7L0X2 663 aa15.71■□□□□ 0.11
COL25A1-209ENST00000622134 RANGAP1P46060 587 aaPredicted RBP15.69■□□□□ 0.1
COL25A1-209ENST00000622134 PABPN1Q86U42 306 aaKnown RBP eCLIP15.69■□□□□ 0.1
COL25A1-209ENST00000622134 CCER1Q8TC90 406 aaPredicted RBP15.69■□□□□ 0.1
COL25A1-209ENST00000622134 TTBK1Q5TCY1 1321 aaPredicted RBP15.57■□□□□ 0.08
COL25A1-209ENST00000622134 MYT1LQ9UL68 1186 aa15.56■□□□□ 0.08
COL25A1-209ENST00000622134 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.55■□□□□ 0.08
COL25A1-209ENST00000622134 HNRNPUL2Q1KMD3 747 aaKnown RBP15.55■□□□□ 0.08
COL25A1-209ENST00000622134 TRIM26Q12899 539 aaPredicted RBP15.48■□□□□ 0.07
COL25A1-209ENST00000622134 CCDC180Q9P1Z9 1646 aa15.37■□□□□ 0.05
COL25A1-209ENST00000622134 PPARGC1BQ86YN6 1023 aaKnown RBP15.36■□□□□ 0.05
COL25A1-209ENST00000622134 NEFLP07196 543 aa15.34■□□□□ 0.05
COL25A1-209ENST00000622134 YTHDC1Q96MU7 727 aaKnown RBP15.33■□□□□ 0.04
COL25A1-209ENST00000622134 RB1CC1Q8TDY2 1594 aa15.24■□□□□ 0.03
COL25A1-209ENST00000622134 FBLN2P98095 1184 aa15.23■□□□□ 0.03
COL25A1-209ENST00000622134 SCRIBQ14160 1630 aa15.17■□□□□ 0.02
COL25A1-209ENST00000622134 GTF3C3Q9Y5Q9 886 aa15.16■□□□□ 0.02
COL25A1-209ENST00000622134 ACIN1Q9UKV3 1341 aaKnown RBP15.09■□□□□ 0.01
COL25A1-209ENST00000622134 NPM1P06748 294 aaKnown RBP eCLIP15.08■□□□□ 0
COL25A1-209ENST00000622134 DIEXFQ68CQ4 756 aaKnown RBP15.07■□□□□ 0
COL25A1-209ENST00000622134 NACADO15069 1562 aa15.06■□□□□ 0
COL25A1-209ENST00000622134 ZCCHC6Q5VYS8 1495 aaKnown RBP15.05■□□□□ -0
COL25A1-209ENST00000622134 CDK11AQ9UQ88 783 aaPredicted RBP15□□□□□ -0.01
COL25A1-209ENST00000622134 CHIC1Q5VXU3 224 aa14.98□□□□□ -0.01
COL25A1-209ENST00000622134 ITGAEP38570 1179 aa14.96□□□□□ -0.01
COL25A1-209ENST00000622134 ESF1Q9H501 851 aaKnown RBP14.92□□□□□ -0.02
COL25A1-209ENST00000622134 RTL5Q5HYW3 569 aaPredicted RBP14.88□□□□□ -0.03
COL25A1-209ENST00000622134 SCAF1Q9H7N4 1312 aaKnown RBP14.87□□□□□ -0.03
COL25A1-209ENST00000622134 CLSPNQ9HAW4 1339 aa14.84□□□□□ -0.03
COL25A1-209ENST00000622134 FAM50AQ14320 339 aaKnown RBP14.82□□□□□ -0.04
COL25A1-209ENST00000622134 LOC105371045A0A1W2PR82 267 aa14.81□□□□□ -0.04
COL25A1-209ENST00000622134 CSRNP3Q8WYN3 585 aa14.79□□□□□ -0.04
COL25A1-209ENST00000622134 CHMP7Q8WUX9 453 aaPredicted RBP14.78□□□□□ -0.04
COL25A1-209ENST00000622134 TRIM52Q96A61 297 aa14.77□□□□□ -0.04
COL25A1-209ENST00000622134 SLC4A1APQ9BWU0 796 aaKnown RBP14.74□□□□□ -0.05
COL25A1-209ENST00000622134 POLR3GLQ9BT43 218 aa14.74□□□□□ -0.05
COL25A1-209ENST00000622134 DAXXQ9UER7 740 aaPredicted RBP14.74□□□□□ -0.05
COL25A1-209ENST00000622134 ERCC6Q03468 1493 aa14.72□□□□□ -0.05
COL25A1-209ENST00000622134 BCANQ96GW7 911 aa14.69□□□□□ -0.06
COL25A1-209ENST00000622134 BAZ1BQ9UIG0 1483 aaKnown RBP14.69□□□□□ -0.06
COL25A1-209ENST00000622134 NEUROD1Q13562 356 aa14.67□□□□□ -0.06
COL25A1-209ENST00000622134 ZNF316A6NFI3 1004 aaPredicted RBP14.65□□□□□ -0.06
COL25A1-209ENST00000622134 DCAF1Q9Y4B6 1507 aa14.65□□□□□ -0.06
COL25A1-209ENST00000622134 P3H3Q8IVL6 736 aa14.62□□□□□ -0.07
COL25A1-209ENST00000622134 ZNF777Q9ULD5 760 aaPredicted RBP14.6□□□□□ -0.07
COL25A1-209ENST00000622134 STAG3Q9UJ98 1225 aa14.59□□□□□ -0.07
COL25A1-209ENST00000622134 ANP32EQ9BTT0 268 aa14.55□□□□□ -0.08
COL25A1-209ENST00000622134 ARID3CA6NKF2 412 aa14.54□□□□□ -0.08
COL25A1-209ENST00000622134 BAZ1AQ9NRL2 1556 aaPredicted RBP14.53□□□□□ -0.08
COL25A1-209ENST00000622134 TSPY4P0CV99 314 aa14.49□□□□□ -0.09
COL25A1-209ENST00000622134 TSPY10P0CW01 314 aa14.49□□□□□ -0.09
COL25A1-209ENST00000622134 GLIPR1L2Q4G1C9 344 aa14.49□□□□□ -0.09
COL25A1-209ENST00000622134 NEFMP07197 916 aa14.48□□□□□ -0.09
COL25A1-209ENST00000622134 BCL11AQ9H165 835 aa14.47□□□□□ -0.09
COL25A1-209ENST00000622134 PDS5BQ9NTI5 1447 aa14.47□□□□□ -0.09
COL25A1-209ENST00000622134 EEA1Q15075 1411 aa14.46□□□□□ -0.09
COL25A1-209ENST00000622134 PLEKHD1A6NEE1 506 aa14.44□□□□□ -0.1
COL25A1-209ENST00000622134 MYO15BQ96JP2 1530 aa14.43□□□□□ -0.1
COL25A1-209ENST00000622134 ZNF326Q5BKZ1 582 aaKnown RBP14.41□□□□□ -0.1
COL25A1-209ENST00000622134 SMARCA2P51531 1590 aa14.41□□□□□ -0.1
COL25A1-209ENST00000622134 KIF27Q86VH2 1401 aa14.4□□□□□ -0.1
COL25A1-209ENST00000622134 EIF5BO60841 1220 aaKnown RBP14.39□□□□□ -0.11
COL25A1-209ENST00000622134 CHGAP10645 457 aaKnown RBP14.39□□□□□ -0.11
COL25A1-209ENST00000622134 MTUS2Q5JR59 1369 aa14.38□□□□□ -0.11
COL25A1-209ENST00000622134 RSF1Q96T23 1441 aaPredicted RBP14.38□□□□□ -0.11
COL25A1-209ENST00000622134 ANP32AP39687 249 aaKnown RBP14.36□□□□□ -0.11
COL25A1-209ENST00000622134 WRNQ14191 1432 aaPredicted RBP eCLIP14.36□□□□□ -0.11
COL25A1-209ENST00000622134 PLPPR3Q6T4P5 718 aa14.34□□□□□ -0.11
COL25A1-209ENST00000622134 TRHP20396 242 aaPredicted RBP14.31□□□□□ -0.12
COL25A1-209ENST00000622134 ANP32CO43423 234 aa14.3□□□□□ -0.12
COL25A1-209ENST00000622134 CNGB1Q14028 1251 aaPredicted RBP14.3□□□□□ -0.12
COL25A1-209ENST00000622134 KCNH8Q96L42 1107 aa14.3□□□□□ -0.12
COL25A1-209ENST00000622134 ARID4BQ4LE39 1312 aaPredicted RBP14.3□□□□□ -0.12
COL25A1-209ENST00000622134 FKBP8Q14318 412 aa14.29□□□□□ -0.12
COL25A1-209ENST00000622134 CECR2Q9BXF3 1484 aa14.28□□□□□ -0.12
COL25A1-209ENST00000622134 ZBTB47Q9UFB7 747 aaPredicted RBP14.26□□□□□ -0.13
COL25A1-209ENST00000622134 PPP1R15AO75807 674 aaPredicted RBP14.23□□□□□ -0.13
COL25A1-209ENST00000622134 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.22□□□□□ -0.13
COL25A1-209ENST00000622134 CARMIL2Q6F5E8 1435 aa14.21□□□□□ -0.13
COL25A1-209ENST00000622134 SLC24A1O60721 1099 aa14.2□□□□□ -0.14
COL25A1-209ENST00000622134 GOLGA3Q08378 1498 aa14.19□□□□□ -0.14
COL25A1-209ENST00000622134 CLIP1P30622 1438 aa14.19□□□□□ -0.14
COL25A1-209ENST00000622134 CEP164Q9UPV0 1460 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms