Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC5.94□□□□□ -1.46
COL6A3P12111 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.94□□□□□ -1.46
COL6A3P12111 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.94□□□□□ -1.46
COL6A3P12111 AC069307.1-201ENST00000602820 447 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 AC024941.1-201ENST00000612250 334 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A3P12111 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A3P12111 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC5.94□□□□□ -1.46
COL6A3P12111 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.94□□□□□ -1.46
COL6A3P12111 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.94□□□□□ -1.46
COL6A3P12111 AC009948.3-201ENST00000603415 1798 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 DROSHA-202ENST00000442743 4991 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
COL6A3P12111 RAD18-201ENST00000264926 5886 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A3P12111 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A3P12111 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.94□□□□□ -1.46
COL6A3P12111 MIR433-201ENST00000384837 93 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A3P12111 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC5.94□□□□□ -1.46
COL6A3P12111 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC5.94□□□□□ -1.46
COL6A3P12111 TRIM60P9Y-201ENST00000438459 816 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 TRIM60P11Y-201ENST00000445313 801 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 AC112225.1-201ENST00000508230 297 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC5.94□□□□□ -1.46
COL6A3P12111 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.94□□□□□ -1.46
COL6A3P12111 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.94□□□□□ -1.46
COL6A3P12111 AC008147.3-201ENST00000548666 354 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.94□□□□□ -1.46
COL6A3P12111 AC006338.2-201ENST00000616864 791 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC5.93□□□□□ -1.46
COL6A3P12111 MELK-207ENST00000536860 2342 ntTSL 2 BASIC5.93□□□□□ -1.46
COL6A3P12111 CLASP1-201ENST00000263710 8092 ntTSL 5 BASIC5.93□□□□□ -1.46
COL6A3P12111 ZNF69-202ENST00000429654 2010 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
COL6A3P12111 GIGYF2-204ENST00000409480 5976 ntTSL 5 BASIC5.93□□□□□ -1.46
COL6A3P12111 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 TXLNB-201ENST00000358430 4753 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 ZNF611-203ENST00000540744 4417 ntAPPRIS P1 TSL 4 BASIC5.93□□□□□ -1.46
COL6A3P12111 NUP214-203ENST00000451030 5021 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 NEK2P4-201ENST00000425793 1329 ntBASIC5.93□□□□□ -1.46
COL6A3P12111 OPHN1-201ENST00000355520 7879 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
COL6A3P12111 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
COL6A3P12111 AC096537.2-201ENST00000413707 714 ntBASIC5.93□□□□□ -1.46
COL6A3P12111 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC5.93□□□□□ -1.46
COL6A3P12111 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC5.93□□□□□ -1.46
COL6A3P12111 AC067959.1-201ENST00000604334 379 ntBASIC5.93□□□□□ -1.46
COL6A3P12111 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.93□□□□□ -1.46
COL6A3P12111 AC139713.2-214ENST00000642059 1811 ntBASIC5.93□□□□□ -1.46
COL6A3P12111 LRP6-206ENST00000543091 4774 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC5.93□□□□□ -1.46
COL6A3P12111 FKBP15-201ENST00000238256 4336 ntAPPRIS P2 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.93□□□□□ -1.46
COL6A3P12111 PEG10-202ENST00000482108 6618 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC5.93□□□□□ -1.46
COL6A3P12111 GIGYF2-201ENST00000373563 5847 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 MAN1A2-201ENST00000356554 8576 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.93□□□□□ -1.46
COL6A3P12111 AC008280.1-201ENST00000418851 412 ntBASIC5.93□□□□□ -1.46
COL6A3P12111 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC5.93□□□□□ -1.46
COL6A3P12111 AC125494.2-201ENST00000602431 657 ntBASIC5.93□□□□□ -1.46
COL6A3P12111 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.93□□□□□ -1.46
COL6A3P12111 AL356752.1-201ENST00000615844 593 ntBASIC5.93□□□□□ -1.46
COL6A3P12111 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 LRRC55-201ENST00000497933 5410 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 CACNA1S-201ENST00000362061 6166 ntAPPRIS P2 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC5.93□□□□□ -1.46
COL6A3P12111 LDB3-205ENST00000429277 5436 ntTSL 2 BASIC5.93□□□□□ -1.46
COL6A3P12111 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 EML5-201ENST00000380664 5910 ntTSL 5 BASIC5.93□□□□□ -1.46
COL6A3P12111 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A3P12111 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
COL6A3P12111 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC5.92□□□□□ -1.46
COL6A3P12111 OFD1P17-201ENST00000437639 3018 ntBASIC5.92□□□□□ -1.46
COL6A3P12111 SORBS1-211ENST00000371247 7354 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
COL6A3P12111 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
COL6A3P12111 AC069213.2-201ENST00000420238 366 ntBASIC5.92□□□□□ -1.46
COL6A3P12111 SDC4P-201ENST00000453285 601 ntBASIC5.92□□□□□ -1.46
COL6A3P12111 OR4A2P-201ENST00000527276 913 ntBASIC5.92□□□□□ -1.46
COL6A3P12111 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A3P12111 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A3P12111 BACE1-202ENST00000392937 5155 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A3P12111 DLC1-202ENST00000316609 1837 ntTSL 2 BASIC5.92□□□□□ -1.46
COL6A3P12111 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
COL6A3P12111 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A3P12111 AC007485.2-201ENST00000623493 1667 ntBASIC5.92□□□□□ -1.46
COL6A3P12111 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A3P12111 ATP2B2-203ENST00000383800 8900 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A3P12111 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
COL6A3P12111 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A3P12111 SLC26A9-203ENST00000367135 4799 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A3P12111 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms