Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC4.62□□□□□ -1.67
CXCL1P09341 AC025188.1-201ENST00000507514 600 ntTSL 3 BASIC4.62□□□□□ -1.67
CXCL1P09341 B3GNTL1P1-201ENST00000509174 289 ntBASIC4.62□□□□□ -1.67
CXCL1P09341 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.62□□□□□ -1.67
CXCL1P09341 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.62□□□□□ -1.67
CXCL1P09341 NPIPB14P-203ENST00000532298 987 ntBASIC4.62□□□□□ -1.67
CXCL1P09341 AC078950.1-201ENST00000538349 550 ntTSL 4 BASIC4.62□□□□□ -1.67
CXCL1P09341 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.62□□□□□ -1.67
CXCL1P09341 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC4.62□□□□□ -1.67
CXCL1P09341 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CXCL1P09341 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC4.62□□□□□ -1.67
CXCL1P09341 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC4.62□□□□□ -1.67
CXCL1P09341 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC4.62□□□□□ -1.67
CXCL1P09341 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CXCL1P09341 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC4.62□□□□□ -1.67
CXCL1P09341 BNIP3P41-202ENST00000616656 861 ntBASIC4.62□□□□□ -1.67
CXCL1P09341 SNX18P12-201ENST00000624821 759 ntBASIC4.62□□□□□ -1.67
CXCL1P09341 AC005355.2-201ENST00000625064 484 ntBASIC4.62□□□□□ -1.67
CXCL1P09341 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC4.62□□□□□ -1.67
CXCL1P09341 GOSR2-222ENST00000639031 885 ntTSL 3 BASIC4.62□□□□□ -1.67
CXCL1P09341 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CXCL1P09341 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CXCL1P09341 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CXCL1P09341 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CXCL1P09341 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC4.62□□□□□ -1.67
CXCL1P09341 AC007938.2-201ENST00000604666 2634 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
CXCL1P09341 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
CXCL1P09341 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.61□□□□□ -1.67
CXCL1P09341 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
CXCL1P09341 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC4.61□□□□□ -1.67
CXCL1P09341 TRMT13-203ENST00000370143 476 ntTSL 3 BASIC4.61□□□□□ -1.67
CXCL1P09341 HHLA3-203ENST00000370940 775 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 AC019178.1-201ENST00000392337 440 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 NPM1P38-201ENST00000403835 865 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 CLIC4P3-201ENST00000422221 752 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 AL513164.1-201ENST00000423268 311 ntTSL 3 BASIC4.61□□□□□ -1.67
CXCL1P09341 AC108479.1-201ENST00000431142 427 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC4.61□□□□□ -1.67
CXCL1P09341 C5orf24-203ENST00000435259 851 ntAPPRIS P1 TSL 3 BASIC4.61□□□□□ -1.67
CXCL1P09341 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC4.61□□□□□ -1.67
CXCL1P09341 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC4.61□□□□□ -1.67
CXCL1P09341 MORF4-201ENST00000447135 971 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC4.61□□□□□ -1.67
CXCL1P09341 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC4.61□□□□□ -1.67
CXCL1P09341 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC4.61□□□□□ -1.67
CXCL1P09341 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC4.61□□□□□ -1.67
CXCL1P09341 ADAM3A-209ENST00000497806 1245 ntTSL 5 BASIC4.61□□□□□ -1.67
CXCL1P09341 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 AC106760.2-201ENST00000504159 619 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 ASNSP4-201ENST00000511103 447 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC4.61□□□□□ -1.67
CXCL1P09341 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC4.61□□□□□ -1.67
CXCL1P09341 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC4.61□□□□□ -1.67
CXCL1P09341 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 BMS1P16-201ENST00000556075 1147 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 AC023968.1-201ENST00000560719 475 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC4.61□□□□□ -1.67
CXCL1P09341 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC4.61□□□□□ -1.67
CXCL1P09341 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
CXCL1P09341 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
CXCL1P09341 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC4.61□□□□□ -1.67
CXCL1P09341 AC006115.2-201ENST00000596823 202 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 SNORD96A-201ENST00000606577 79 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 SNORA74.4-201ENST00000607595 199 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 RAB28P4-201ENST00000622233 665 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 AC127071.2-201ENST00000623293 527 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 OR5G5P-204ENST00000627642 621 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 AC103703.1-201ENST00000634783 663 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
CXCL1P09341 TUBBP10-201ENST00000427668 1301 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 TRIM75P-201ENST00000503032 1407 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
CXCL1P09341 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC4.61□□□□□ -1.67
CXCL1P09341 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 AL353743.3-201ENST00000442109 1468 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 LINC01990-201ENST00000609293 1487 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.61□□□□□ -1.67
CXCL1P09341 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.61□□□□□ -1.67
CXCL1P09341 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
CXCL1P09341 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
CXCL1P09341 AC095038.1-201ENST00000429248 1591 ntBASIC4.61□□□□□ -1.67
CXCL1P09341 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC4.61□□□□□ -1.67
CXCL1P09341 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
CXCL1P09341 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC4.61□□□□□ -1.67
CXCL1P09341 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CXCL1P09341 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC4.61□□□□□ -1.67
CXCL1P09341 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms