RNA–Protein interactions for RNA: ENST00000501177.7

CRNDE-201, Transcript of colorectal neoplasia differentially expressed, humanhuman

TSL 1 (best) BASIC

Gene CRNDE, Length 614 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRNDE-201ENST00000501177 AEBP2Q6ZN18 517 aaPredicted RBP30.11■■■□□ 2.41
CRNDE-201ENST00000501177 CHIC1Q5VXU3 224 aa28.68■■■□□ 2.18
CRNDE-201ENST00000501177 SENP3Q9H4L4 574 aaPredicted RBP25.5■■□□□ 1.67
CRNDE-201ENST00000501177 PHF23Q9BUL5 403 aaPredicted RBP25.26■■□□□ 1.63
CRNDE-201ENST00000501177 FOXD1Q16676 465 aa23.84■■□□□ 1.41
CRNDE-201ENST00000501177 PLPPR3Q6T4P5 718 aa22.94■■□□□ 1.26
CRNDE-201ENST00000501177 PPP6R1Q9UPN7 881 aa22.5■■□□□ 1.19
CRNDE-201ENST00000501177 ADRA2BP18089 450 aa22.4■■□□□ 1.18
CRNDE-201ENST00000501177 PIAS4Q8N2W9 510 aaPredicted RBP22.27■■□□□ 1.16
CRNDE-201ENST00000501177 MSH5O43196 834 aa22.12■■□□□ 1.13
CRNDE-201ENST00000501177 POTEDQ86YR6 584 aa21.37■■□□□ 1.01
CRNDE-201ENST00000501177 MAPK8IP2Q13387 824 aaPredicted RBP20.55■□□□□ 0.88
CRNDE-201ENST00000501177 SCAF1Q9H7N4 1312 aaKnown RBP20.31■□□□□ 0.84
CRNDE-201ENST00000501177 DMRT2Q9Y5R5 561 aa20.29■□□□□ 0.84
CRNDE-201ENST00000501177 PPP4R3CPQ6ZMV5 832 aa20.18■□□□□ 0.82
CRNDE-201ENST00000501177 CNKSR2Q8WXI2 1034 aa19.72■□□□□ 0.75
CRNDE-201ENST00000501177 HOXD11P31277 338 aaPredicted RBP19.62■□□□□ 0.73
CRNDE-201ENST00000501177 RNF216Q9NWF9 866 aaPredicted RBP19.5■□□□□ 0.71
CRNDE-201ENST00000501177 DCAF8L1A6NGE4 600 aa19.43■□□□□ 0.7
CRNDE-201ENST00000501177 NCBP3Q53F19 620 aaKnown RBP19.37■□□□□ 0.69
CRNDE-201ENST00000501177 NPM3O75607 178 aaKnown RBP19.21■□□□□ 0.67
CRNDE-201ENST00000501177 KCNA4P22459 653 aa19.05■□□□□ 0.64
CRNDE-201ENST00000501177 RNF39Q9H2S5 420 aa18.97■□□□□ 0.63
CRNDE-201ENST00000501177 CACNB1Q02641 598 aaPredicted RBP18.89■□□□□ 0.61
CRNDE-201ENST00000501177 DNAJC5BQ9UF47 199 aa18.83■□□□□ 0.6
CRNDE-201ENST00000501177 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.66■□□□□ 0.58
CRNDE-201ENST00000501177 C1QBPQ07021 282 aaKnown RBP18.63■□□□□ 0.57
CRNDE-201ENST00000501177 U3KPZ7 1027 aaPredicted RBP18.36■□□□□ 0.53
CRNDE-201ENST00000501177 SLC4A2P04920 1241 aa18.34■□□□□ 0.53
CRNDE-201ENST00000501177 SPINK5Q9NQ38 1064 aaPredicted RBP18.06■□□□□ 0.48
CRNDE-201ENST00000501177 SLC4A1APQ9BWU0 796 aaKnown RBP17.95■□□□□ 0.46
CRNDE-201ENST00000501177 CAPN15O75808 1086 aa17.94■□□□□ 0.46
CRNDE-201ENST00000501177 DSG3P32926 999 aa17.84■□□□□ 0.45
CRNDE-201ENST00000501177 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.75■□□□□ 0.43
CRNDE-201ENST00000501177 HNRNPUL2Q1KMD3 747 aaKnown RBP17.75■□□□□ 0.43
CRNDE-201ENST00000501177 TRHP20396 242 aaPredicted RBP17.72■□□□□ 0.43
CRNDE-201ENST00000501177 MYCNP04198 464 aaPredicted RBP17.7■□□□□ 0.42
CRNDE-201ENST00000501177 SAMD1Q6SPF0 538 aaPredicted RBP17.7■□□□□ 0.42
CRNDE-201ENST00000501177 APLP2Q06481 763 aa17.67■□□□□ 0.42
CRNDE-201ENST00000501177 FOXD4L1Q9NU39 408 aa17.64■□□□□ 0.41
CRNDE-201ENST00000501177 ZNF219Q9P2Y4 722 aaPredicted RBP17.63■□□□□ 0.41
CRNDE-201ENST00000501177 ABCB7O75027 752 aa17.6■□□□□ 0.41
CRNDE-201ENST00000501177 ZBTB22O15209 634 aa17.58■□□□□ 0.4
CRNDE-201ENST00000501177 ATF5Q9Y2D1 282 aaPredicted RBP17.41■□□□□ 0.38
CRNDE-201ENST00000501177 POLA2Q14181 598 aa17.29■□□□□ 0.36
CRNDE-201ENST00000501177 ATXN8OSP0DMR3 200 aa17.03■□□□□ 0.32
CRNDE-201ENST00000501177 CSRNP3Q8WYN3 585 aa16.89■□□□□ 0.29
CRNDE-201ENST00000501177 RBM42Q9BTD8 480 aaKnown RBP16.89■□□□□ 0.29
CRNDE-201ENST00000501177 ZBTB12Q9Y330 459 aaPredicted RBP16.85■□□□□ 0.29
CRNDE-201ENST00000501177 OSCARQ8IYS5 282 aa16.76■□□□□ 0.27
CRNDE-201ENST00000501177 POTEHQ6S545 545 aa16.75■□□□□ 0.27
CRNDE-201ENST00000501177 EHMT2Q96KQ7 1210 aa16.75■□□□□ 0.27
CRNDE-201ENST00000501177 MKRN4PQ13434 485 aaPredicted RBP16.6■□□□□ 0.25
CRNDE-201ENST00000501177 AKT1S1Q96B36 256 aa16.6■□□□□ 0.25
CRNDE-201ENST00000501177 FBLN2P98095 1184 aa16.54■□□□□ 0.24
CRNDE-201ENST00000501177 CHRDL2Q6WN34 429 aa16.53■□□□□ 0.24
CRNDE-201ENST00000501177 REM2Q8IYK8 340 aaPredicted RBP16.49■□□□□ 0.23
CRNDE-201ENST00000501177 SPDYE2BA6NHP3 402 aa16.4■□□□□ 0.22
CRNDE-201ENST00000501177 SPDYE6P0CI01 402 aa16.4■□□□□ 0.22
CRNDE-201ENST00000501177 SPDYE2Q495Y8 402 aa16.4■□□□□ 0.22
CRNDE-201ENST00000501177 PITPNM1O00562 1244 aa16.33■□□□□ 0.2
CRNDE-201ENST00000501177 SSUH2Q9Y2M2 353 aa16.26■□□□□ 0.19
CRNDE-201ENST00000501177 ZNF692Q9BU19 519 aaPredicted RBP16.25■□□□□ 0.19
CRNDE-201ENST00000501177 PIP4P2Q8N4L2 257 aa16.22■□□□□ 0.19
CRNDE-201ENST00000501177 FXR2P51116 673 aaKnown RBP eCLIP16.13■□□□□ 0.17
CRNDE-201ENST00000501177 SPDYE1Q8NFV5 336 aaPredicted RBP16.06■□□□□ 0.16
CRNDE-201ENST00000501177 PABPN1Q86U42 306 aaKnown RBP eCLIP16.05■□□□□ 0.16
CRNDE-201ENST00000501177 CLEC11AQ9Y240 323 aa16.05■□□□□ 0.16
CRNDE-201ENST00000501177 PRKAR2AP13861 404 aaKnown RBP15.88■□□□□ 0.13
CRNDE-201ENST00000501177 SPDYE4A6NLX3 237 aa15.83■□□□□ 0.12
CRNDE-201ENST00000501177 HAX1O00165 279 aa15.82■□□□□ 0.12
CRNDE-201ENST00000501177 CHADLQ6NUI6 762 aa15.8■□□□□ 0.12
CRNDE-201ENST00000501177 PRR29P0C7W0 189 aa15.79■□□□□ 0.12
CRNDE-201ENST00000501177 SP7Q8TDD2 431 aaPredicted RBP15.78■□□□□ 0.12
CRNDE-201ENST00000501177 EVX2Q03828 476 aa15.76■□□□□ 0.11
CRNDE-201ENST00000501177 C19orf67A6NJJ6 358 aa15.61■□□□□ 0.09
CRNDE-201ENST00000501177 STAG3Q9UJ98 1225 aa15.54■□□□□ 0.08
CRNDE-201ENST00000501177 CREBZFQ9NS37 354 aa15.53■□□□□ 0.08
CRNDE-201ENST00000501177 FARP1Q9Y4F1 1045 aaPredicted RBP15.53■□□□□ 0.08
CRNDE-201ENST00000501177 PROM2Q8N271 834 aa15.52■□□□□ 0.08
CRNDE-201ENST00000501177 CD44P16070 742 aaKnown RBP15.38■□□□□ 0.05
CRNDE-201ENST00000501177 GABBR2O75899 941 aa15.33■□□□□ 0.04
CRNDE-201ENST00000501177 MNX1P50219 401 aaPredicted RBP15.31■□□□□ 0.04
CRNDE-201ENST00000501177 FKBP8Q14318 412 aa15.26■□□□□ 0.03
CRNDE-201ENST00000501177 ZRANB1Q9UGI0 708 aa15.2■□□□□ 0.02
CRNDE-201ENST00000501177 ZNF579Q8NAF0 562 aaKnown RBP15.16■□□□□ 0.02
CRNDE-201ENST00000501177 NISCHQ9Y2I1 1504 aa15.16■□□□□ 0.02
CRNDE-201ENST00000501177 NPM1P06748 294 aaKnown RBP eCLIP15.12■□□□□ 0.01
CRNDE-201ENST00000501177 POTEIP0CG38 1075 aa15.08■□□□□ 0
CRNDE-201ENST00000501177 MIER1Q8N108 512 aa15.06■□□□□ 0
CRNDE-201ENST00000501177 PHF12Q96QT6 1004 aa15.06■□□□□ 0
CRNDE-201ENST00000501177 PAK3O75914 559 aaPredicted RBP15.02■□□□□ -0
CRNDE-201ENST00000501177 GALR2O43603 387 aaPredicted RBP15.01□□□□□ -0.01
CRNDE-201ENST00000501177 CLCN6P51797 869 aa15.01□□□□□ -0.01
CRNDE-201ENST00000501177 PLCD3Q8N3E9 789 aa14.95□□□□□ -0.02
CRNDE-201ENST00000501177 TSPYL2Q9H2G4 693 aaPredicted RBP14.95□□□□□ -0.02
CRNDE-201ENST00000501177 PLEKHG5O94827 1062 aa14.92□□□□□ -0.02
CRNDE-201ENST00000501177 RASEFQ8IZ41 740 aa14.9□□□□□ -0.02
CRNDE-201ENST00000501177 DCBLD2Q96PD2 775 aa14.9□□□□□ -0.02
CRNDE-201ENST00000501177 CCDC61Q9Y6R9 512 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms