Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
DDX28Q9NUL7 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
DDX28Q9NUL7 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
DDX28Q9NUL7 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
DDX28Q9NUL7 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.02■□□□□ 0.48
DDX28Q9NUL7 KRT19P1-201ENST00000405746 1186 ntBASIC18.02■□□□□ 0.48
DDX28Q9NUL7 AC090192.1-201ENST00000517740 490 ntBASIC18.02■□□□□ 0.48
DDX28Q9NUL7 AC243732.1-201ENST00000612648 864 ntBASIC18.02■□□□□ 0.48
DDX28Q9NUL7 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
DDX28Q9NUL7 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
DDX28Q9NUL7 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.02■□□□□ 0.47
DDX28Q9NUL7 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
DDX28Q9NUL7 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
DDX28Q9NUL7 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
DDX28Q9NUL7 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
DDX28Q9NUL7 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
DDX28Q9NUL7 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 AC005332.8-201ENST00000622750 2735 ntBASIC18.01■□□□□ 0.47
DDX28Q9NUL7 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 KRT18P61-201ENST00000585825 1298 ntBASIC18.01■□□□□ 0.47
DDX28Q9NUL7 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
DDX28Q9NUL7 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
DDX28Q9NUL7 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
DDX28Q9NUL7 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
DDX28Q9NUL7 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
DDX28Q9NUL7 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18■□□□□ 0.47
DDX28Q9NUL7 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18■□□□□ 0.47
DDX28Q9NUL7 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
DDX28Q9NUL7 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
DDX28Q9NUL7 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
DDX28Q9NUL7 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18■□□□□ 0.47
DDX28Q9NUL7 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18■□□□□ 0.47
DDX28Q9NUL7 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18■□□□□ 0.47
DDX28Q9NUL7 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18■□□□□ 0.47
DDX28Q9NUL7 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
DDX28Q9NUL7 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
DDX28Q9NUL7 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
DDX28Q9NUL7 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18■□□□□ 0.47
DDX28Q9NUL7 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
DDX28Q9NUL7 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
DDX28Q9NUL7 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 OR6D1P-202ENST00000641007 5290 ntBASIC17.99■□□□□ 0.47
DDX28Q9NUL7 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 KRT18P5-201ENST00000436075 1291 ntBASIC17.99■□□□□ 0.47
DDX28Q9NUL7 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms