Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 AC008040.2-201ENST00000461049 708 ntBASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 AC026271.3-201ENST00000571884 352 ntBASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 PHGDH-210ENST00000641115 1638 ntBASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
USHBP1Q8N6Y0 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 CRYGFP-201ENST00000418459 633 ntBASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 DUX4L26-201ENST00000489078 1255 ntBASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 NME3-204ENST00000563498 920 ntTSL 2 BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC26.12■■□□□ 1.77
USHBP1Q8N6Y0 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USHBP1Q8N6Y0 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC26.11■■□□□ 1.77
USHBP1Q8N6Y0 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC26.11■■□□□ 1.77
USHBP1Q8N6Y0 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USHBP1Q8N6Y0 AC097488.1-201ENST00000507834 756 ntBASIC26.11■■□□□ 1.77
USHBP1Q8N6Y0 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC26.11■■□□□ 1.77
USHBP1Q8N6Y0 AC006011.2-201ENST00000621313 1158 ntBASIC26.11■■□□□ 1.77
USHBP1Q8N6Y0 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USHBP1Q8N6Y0 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
USHBP1Q8N6Y0 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
USHBP1Q8N6Y0 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
USHBP1Q8N6Y0 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
USHBP1Q8N6Y0 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
USHBP1Q8N6Y0 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 NTF6B-201ENST00000591913 560 ntBASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 HLA-A-209ENST00000638375 975 ntBASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
USHBP1Q8N6Y0 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 AP005242.2-201ENST00000580065 1175 ntBASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USHBP1Q8N6Y0 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 RNF146-204ENST00000476956 884 ntTSL 2 BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 WWOX-216ENST00000569818 525 ntBASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms