Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.8■■□□□ 1.08
PEX3P56589 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
PEX3P56589 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.8■■□□□ 1.08
PEX3P56589 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
PEX3P56589 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
PEX3P56589 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
PEX3P56589 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.8■■□□□ 1.08
PEX3P56589 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
PEX3P56589 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PEX3P56589 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
PEX3P56589 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PEX3P56589 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PEX3P56589 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
PEX3P56589 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PEX3P56589 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
PEX3P56589 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.8■■□□□ 1.08
PEX3P56589 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PEX3P56589 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
PEX3P56589 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PEX3P56589 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PEX3P56589 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PEX3P56589 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.8■■□□□ 1.08
PEX3P56589 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.8■■□□□ 1.08
PEX3P56589 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
PEX3P56589 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PEX3P56589 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
PEX3P56589 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
PEX3P56589 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.79■■□□□ 1.08
PEX3P56589 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PEX3P56589 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.79■■□□□ 1.08
PEX3P56589 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
PEX3P56589 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PEX3P56589 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC21.79■■□□□ 1.08
PEX3P56589 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PEX3P56589 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.79■■□□□ 1.08
PEX3P56589 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
PEX3P56589 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.79■■□□□ 1.08
PEX3P56589 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.79■■□□□ 1.08
PEX3P56589 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PEX3P56589 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.79■■□□□ 1.08
PEX3P56589 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.79■■□□□ 1.08
PEX3P56589 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.79■■□□□ 1.08
PEX3P56589 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PEX3P56589 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.79■■□□□ 1.08
PEX3P56589 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PEX3P56589 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.78■■□□□ 1.08
PEX3P56589 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PEX3P56589 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
PEX3P56589 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PEX3P56589 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PEX3P56589 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.78■■□□□ 1.08
PEX3P56589 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
PEX3P56589 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.78■■□□□ 1.08
PEX3P56589 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.78■■□□□ 1.08
PEX3P56589 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.78■■□□□ 1.08
PEX3P56589 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.78■■□□□ 1.08
PEX3P56589 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PEX3P56589 FAM197Y4-202ENST00000622692 608 ntBASIC21.78■■□□□ 1.08
PEX3P56589 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.78■■□□□ 1.08
PEX3P56589 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.78■■□□□ 1.08
PEX3P56589 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PEX3P56589 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PEX3P56589 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PEX3P56589 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
PEX3P56589 AP001271.2-201ENST00000624018 1556 ntBASIC21.78■■□□□ 1.08
PEX3P56589 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PEX3P56589 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PEX3P56589 AC073130.3-201ENST00000624389 2278 ntBASIC21.77■■□□□ 1.08
PEX3P56589 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PEX3P56589 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.77■■□□□ 1.08
PEX3P56589 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.77■■□□□ 1.08
PEX3P56589 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.77■■□□□ 1.08
PEX3P56589 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.77■■□□□ 1.08
PEX3P56589 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PEX3P56589 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PEX3P56589 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PEX3P56589 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.77■■□□□ 1.08
PEX3P56589 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
PEX3P56589 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
PEX3P56589 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.77■■□□□ 1.08
PEX3P56589 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PEX3P56589 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.77■■□□□ 1.08
PEX3P56589 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.77■■□□□ 1.08
PEX3P56589 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PEX3P56589 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.77■■□□□ 1.08
PEX3P56589 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PEX3P56589 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PEX3P56589 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
PEX3P56589 NBPF21P-201ENST00000425093 1451 ntBASIC21.77■■□□□ 1.07
PEX3P56589 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
PEX3P56589 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PEX3P56589 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.76■■□□□ 1.07
PEX3P56589 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PEX3P56589 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PEX3P56589 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PEX3P56589 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
PEX3P56589 AC133681.1-201ENST00000465482 601 ntBASIC21.76■■□□□ 1.07
PEX3P56589 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.76■■□□□ 1.07
PEX3P56589 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.76■■□□□ 1.07
PEX3P56589 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms