Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHMT2P34897 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHMT2P34897 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.35■□□□□ 0.69
SHMT2P34897 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
SHMT2P34897 KRT16P6-202ENST00000425692 1426 ntBASIC19.34■□□□□ 0.69
SHMT2P34897 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.34■□□□□ 0.69
SHMT2P34897 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.34■□□□□ 0.69
SHMT2P34897 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
SHMT2P34897 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHMT2P34897 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHMT2P34897 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.34■□□□□ 0.69
SHMT2P34897 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHMT2P34897 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.34■□□□□ 0.69
SHMT2P34897 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.34■□□□□ 0.69
SHMT2P34897 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.34■□□□□ 0.69
SHMT2P34897 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.34■□□□□ 0.69
SHMT2P34897 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHMT2P34897 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SHMT2P34897 AC073648.6-201ENST00000641589 218 ntBASIC19.34■□□□□ 0.69
SHMT2P34897 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHMT2P34897 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHMT2P34897 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHMT2P34897 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
SHMT2P34897 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.34■□□□□ 0.69
SHMT2P34897 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHMT2P34897 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.34■□□□□ 0.69
SHMT2P34897 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHMT2P34897 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.34■□□□□ 0.69
SHMT2P34897 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.34■□□□□ 0.69
SHMT2P34897 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHMT2P34897 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SHMT2P34897 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.33■□□□□ 0.69
SHMT2P34897 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHMT2P34897 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHMT2P34897 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.33■□□□□ 0.69
SHMT2P34897 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHMT2P34897 AC069544.1-201ENST00000609399 999 ntBASIC19.33■□□□□ 0.68
SHMT2P34897 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHMT2P34897 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHMT2P34897 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SHMT2P34897 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SHMT2P34897 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SHMT2P34897 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHMT2P34897 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHMT2P34897 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SHMT2P34897 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHMT2P34897 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHMT2P34897 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHMT2P34897 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.32■□□□□ 0.68
SHMT2P34897 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHMT2P34897 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHMT2P34897 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.32■□□□□ 0.68
SHMT2P34897 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
SHMT2P34897 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHMT2P34897 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.32■□□□□ 0.68
SHMT2P34897 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHMT2P34897 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHMT2P34897 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHMT2P34897 RPS2P52-201ENST00000469610 820 ntBASIC19.32■□□□□ 0.68
SHMT2P34897 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.32■□□□□ 0.68
SHMT2P34897 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
SHMT2P34897 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
SHMT2P34897 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHMT2P34897 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHMT2P34897 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHMT2P34897 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.32■□□□□ 0.68
SHMT2P34897 AC112907.3-201ENST00000577781 2400 ntBASIC19.32■□□□□ 0.68
SHMT2P34897 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHMT2P34897 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHMT2P34897 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHMT2P34897 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHMT2P34897 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHMT2P34897 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
SHMT2P34897 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHMT2P34897 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHMT2P34897 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SHMT2P34897 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHMT2P34897 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.31■□□□□ 0.68
SHMT2P34897 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.31■□□□□ 0.68
SHMT2P34897 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
SHMT2P34897 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.31■□□□□ 0.68
SHMT2P34897 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHMT2P34897 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SHMT2P34897 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SHMT2P34897 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHMT2P34897 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
SHMT2P34897 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHMT2P34897 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.31■□□□□ 0.68
SHMT2P34897 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHMT2P34897 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHMT2P34897 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SHMT2P34897 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHMT2P34897 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.3■□□□□ 0.68
SHMT2P34897 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SHMT2P34897 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHMT2P34897 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.3■□□□□ 0.68
SHMT2P34897 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.3■□□□□ 0.68
SHMT2P34897 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SHMT2P34897 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.3■□□□□ 0.68
SHMT2P34897 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms