Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SDC1P18827 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC1P18827 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SDC1P18827 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
SDC1P18827 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC1P18827 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.82■□□□□ 0.6
SDC1P18827 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
SDC1P18827 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC1P18827 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.82■□□□□ 0.6
SDC1P18827 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC1P18827 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.82■□□□□ 0.6
SDC1P18827 BX276092.2-201ENST00000417668 665 ntBASIC18.82■□□□□ 0.6
SDC1P18827 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.82■□□□□ 0.6
SDC1P18827 AC026185.1-201ENST00000445748 174 ntBASIC18.82■□□□□ 0.6
SDC1P18827 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.82■□□□□ 0.6
SDC1P18827 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC1P18827 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC1P18827 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC1P18827 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SDC1P18827 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SDC1P18827 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.81■□□□□ 0.6
SDC1P18827 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.81■□□□□ 0.6
SDC1P18827 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDC1P18827 BX323043.1-201ENST00000641006 1765 ntBASIC18.81■□□□□ 0.6
SDC1P18827 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDC1P18827 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.81■□□□□ 0.6
SDC1P18827 AL137784.2-201ENST00000607332 1000 ntBASIC18.81■□□□□ 0.6
SDC1P18827 AC098818.2-201ENST00000564925 2320 ntBASIC18.81■□□□□ 0.6
SDC1P18827 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.81■□□□□ 0.6
SDC1P18827 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SDC1P18827 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.81■□□□□ 0.6
SDC1P18827 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC1P18827 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.8■□□□□ 0.6
SDC1P18827 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC1P18827 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
SDC1P18827 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
SDC1P18827 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.8■□□□□ 0.6
SDC1P18827 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
SDC1P18827 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC1P18827 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SDC1P18827 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC1P18827 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC1P18827 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SDC1P18827 CROCCP5-201ENST00000436658 830 ntBASIC18.8■□□□□ 0.6
SDC1P18827 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.8■□□□□ 0.6
SDC1P18827 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SDC1P18827 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.8■□□□□ 0.6
SDC1P18827 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SDC1P18827 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.8■□□□□ 0.6
SDC1P18827 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.8■□□□□ 0.6
SDC1P18827 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC1P18827 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC1P18827 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
SDC1P18827 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC1P18827 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC1P18827 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
SDC1P18827 Z82202.1-201ENST00000623446 1880 ntBASIC18.8■□□□□ 0.6
SDC1P18827 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDC1P18827 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDC1P18827 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDC1P18827 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDC1P18827 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDC1P18827 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.79■□□□□ 0.6
SDC1P18827 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.79■□□□□ 0.6
SDC1P18827 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDC1P18827 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDC1P18827 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.79■□□□□ 0.6
SDC1P18827 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDC1P18827 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDC1P18827 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDC1P18827 AC018553.1-201ENST00000616682 1458 ntBASIC18.78■□□□□ 0.6
SDC1P18827 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDC1P18827 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDC1P18827 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.78■□□□□ 0.6
SDC1P18827 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.78■□□□□ 0.6
SDC1P18827 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SDC1P18827 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDC1P18827 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SDC1P18827 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.78■□□□□ 0.6
SDC1P18827 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.78■□□□□ 0.6
SDC1P18827 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
SDC1P18827 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SDC1P18827 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SDC1P18827 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SDC1P18827 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.78■□□□□ 0.6
SDC1P18827 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.78■□□□□ 0.6
SDC1P18827 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SDC1P18827 AP000974.1-201ENST00000623909 2387 ntBASIC18.78■□□□□ 0.6
SDC1P18827 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDC1P18827 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.78■□□□□ 0.6
SDC1P18827 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDC1P18827 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.78■□□□□ 0.6
SDC1P18827 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.78■□□□□ 0.6
SDC1P18827 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SDC1P18827 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SDC1P18827 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.78■□□□□ 0.6
SDC1P18827 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDC1P18827 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.77■□□□□ 0.6
SDC1P18827 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC1P18827 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms