Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
VIMP08670 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.82■□□□□ 0.76
VIMP08670 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC19.82■□□□□ 0.76
VIMP08670 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.82■□□□□ 0.76
VIMP08670 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.82■□□□□ 0.76
VIMP08670 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
VIMP08670 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
VIMP08670 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.81■□□□□ 0.76
VIMP08670 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.81■□□□□ 0.76
VIMP08670 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
VIMP08670 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.81■□□□□ 0.76
VIMP08670 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VIMP08670 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
VIMP08670 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VIMP08670 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VIMP08670 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.81■□□□□ 0.76
VIMP08670 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.81■□□□□ 0.76
VIMP08670 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
VIMP08670 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VIMP08670 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
VIMP08670 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VIMP08670 BCL2-203ENST00000589955 5011 ntBASIC19.81■□□□□ 0.76
VIMP08670 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VIMP08670 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VIMP08670 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.81■□□□□ 0.76
VIMP08670 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.81■□□□□ 0.76
VIMP08670 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
VIMP08670 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VIMP08670 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.8■□□□□ 0.76
VIMP08670 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VIMP08670 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VIMP08670 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.8■□□□□ 0.76
VIMP08670 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VIMP08670 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VIMP08670 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.8■□□□□ 0.76
VIMP08670 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.8■□□□□ 0.76
VIMP08670 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VIMP08670 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
VIMP08670 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VIMP08670 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.8■□□□□ 0.76
VIMP08670 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VIMP08670 AC105233.4-201ENST00000642045 216 ntBASIC19.8■□□□□ 0.76
VIMP08670 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.8■□□□□ 0.76
VIMP08670 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.8■□□□□ 0.76
VIMP08670 CROCCP3-202ENST00000420820 1947 ntBASIC19.8■□□□□ 0.76
VIMP08670 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VIMP08670 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
VIMP08670 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
VIMP08670 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.79■□□□□ 0.76
VIMP08670 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VIMP08670 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VIMP08670 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VIMP08670 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VIMP08670 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
VIMP08670 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.79■□□□□ 0.76
VIMP08670 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VIMP08670 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VIMP08670 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VIMP08670 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VIMP08670 BX842568.3-201ENST00000418104 571 ntBASIC19.79■□□□□ 0.76
VIMP08670 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.79■□□□□ 0.76
VIMP08670 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
VIMP08670 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VIMP08670 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.79■□□□□ 0.76
VIMP08670 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.79■□□□□ 0.76
VIMP08670 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VIMP08670 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VIMP08670 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VIMP08670 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
VIMP08670 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VIMP08670 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VIMP08670 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VIMP08670 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
VIMP08670 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
VIMP08670 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
VIMP08670 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.78■□□□□ 0.76
VIMP08670 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VIMP08670 AC126544.1-201ENST00000580842 1059 ntBASIC19.78■□□□□ 0.76
VIMP08670 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VIMP08670 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.78■□□□□ 0.76
VIMP08670 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VIMP08670 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VIMP08670 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
VIMP08670 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VIMP08670 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VIMP08670 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.78■□□□□ 0.76
VIMP08670 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VIMP08670 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
VIMP08670 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
VIMP08670 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VIMP08670 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms