Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4BO75351 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.34■□□□□ 0.69
VPS4BO75351 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS4BO75351 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
VPS4BO75351 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4BO75351 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
VPS4BO75351 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4BO75351 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
VPS4BO75351 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4BO75351 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS4BO75351 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4BO75351 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.33■□□□□ 0.69
VPS4BO75351 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS4BO75351 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.33■□□□□ 0.69
VPS4BO75351 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
VPS4BO75351 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.33■□□□□ 0.68
VPS4BO75351 AC097658.1-201ENST00000475555 843 ntBASIC19.33■□□□□ 0.68
VPS4BO75351 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.33■□□□□ 0.68
VPS4BO75351 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.33■□□□□ 0.68
VPS4BO75351 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.33■□□□□ 0.68
VPS4BO75351 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.33■□□□□ 0.68
VPS4BO75351 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS4BO75351 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
VPS4BO75351 TREX1-205ENST00000625293 1783 ntBASIC19.33■□□□□ 0.68
VPS4BO75351 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS4BO75351 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS4BO75351 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS4BO75351 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS4BO75351 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS4BO75351 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.33■□□□□ 0.68
VPS4BO75351 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
VPS4BO75351 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS4BO75351 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS4BO75351 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS4BO75351 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS4BO75351 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4BO75351 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4BO75351 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS4BO75351 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS4BO75351 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4BO75351 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VPS4BO75351 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4BO75351 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4BO75351 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.32■□□□□ 0.68
VPS4BO75351 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.32■□□□□ 0.68
VPS4BO75351 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS4BO75351 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS4BO75351 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4BO75351 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VPS4BO75351 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS4BO75351 AC068338.2-201ENST00000563278 1430 ntBASIC19.32■□□□□ 0.68
VPS4BO75351 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4BO75351 AC005332.7-201ENST00000614046 2005 ntBASIC19.32■□□□□ 0.68
VPS4BO75351 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4BO75351 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4BO75351 AC009237.14-201ENST00000609975 1594 ntBASIC19.32■□□□□ 0.68
VPS4BO75351 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4BO75351 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4BO75351 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS4BO75351 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
VPS4BO75351 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4BO75351 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4BO75351 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4BO75351 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS4BO75351 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS4BO75351 AL596275.1-201ENST00000423464 877 ntBASIC19.31■□□□□ 0.68
VPS4BO75351 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4BO75351 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS4BO75351 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS4BO75351 AC006058.3-201ENST00000606217 1069 ntBASIC19.31■□□□□ 0.68
VPS4BO75351 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS4BO75351 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS4BO75351 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4BO75351 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
VPS4BO75351 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4BO75351 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4BO75351 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4BO75351 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4BO75351 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS4BO75351 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS4BO75351 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4BO75351 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
VPS4BO75351 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4BO75351 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4BO75351 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4BO75351 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
VPS4BO75351 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4BO75351 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.3■□□□□ 0.68
VPS4BO75351 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.3■□□□□ 0.68
VPS4BO75351 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
VPS4BO75351 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS4BO75351 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.3■□□□□ 0.68
VPS4BO75351 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.3■□□□□ 0.68
VPS4BO75351 AL591742.1-201ENST00000604433 565 ntBASIC19.3■□□□□ 0.68
VPS4BO75351 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4BO75351 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4BO75351 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
VPS4BO75351 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4BO75351 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
VPS4BO75351 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms