Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SDCBPO00560 AL162430.1-201ENST00000480705 870 ntBASIC16.78■□□□□ 0.28
SDCBPO00560 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC16.78■□□□□ 0.28
SDCBPO00560 MFSD11-216ENST00000590393 1141 ntBASIC16.78■□□□□ 0.28
SDCBPO00560 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC16.78■□□□□ 0.28
SDCBPO00560 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDCBPO00560 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SDCBPO00560 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC16.78■□□□□ 0.28
SDCBPO00560 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SDCBPO00560 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC16.78■□□□□ 0.28
SDCBPO00560 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDCBPO00560 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SDCBPO00560 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDCBPO00560 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SDCBPO00560 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.78■□□□□ 0.28
SDCBPO00560 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SDCBPO00560 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC16.78■□□□□ 0.28
SDCBPO00560 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
SDCBPO00560 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SDCBPO00560 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SDCBPO00560 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC16.77■□□□□ 0.28
SDCBPO00560 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
SDCBPO00560 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC16.77■□□□□ 0.28
SDCBPO00560 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SDCBPO00560 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC16.77■□□□□ 0.28
SDCBPO00560 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SDCBPO00560 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC16.77■□□□□ 0.28
SDCBPO00560 PGM5P4-201ENST00000421970 445 ntBASIC16.77■□□□□ 0.28
SDCBPO00560 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
SDCBPO00560 PBX1-209ENST00000485769 834 ntTSL 2 BASIC16.77■□□□□ 0.28
SDCBPO00560 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
SDCBPO00560 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
SDCBPO00560 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.77■□□□□ 0.27
SDCBPO00560 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SDCBPO00560 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
SDCBPO00560 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
SDCBPO00560 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
SDCBPO00560 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
SDCBPO00560 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
SDCBPO00560 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SDCBPO00560 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SDCBPO00560 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDCBPO00560 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDCBPO00560 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDCBPO00560 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDCBPO00560 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.76■□□□□ 0.27
SDCBPO00560 MOK-225ENST00000522867 1883 ntTSL 5 BASIC16.76■□□□□ 0.27
SDCBPO00560 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SDCBPO00560 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SDCBPO00560 CD37-204ENST00000535669 1674 ntTSL 2 BASIC16.76■□□□□ 0.27
SDCBPO00560 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDCBPO00560 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC16.76■□□□□ 0.27
SDCBPO00560 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SDCBPO00560 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDCBPO00560 UQCRFS1P1-201ENST00000435169 820 ntBASIC16.76■□□□□ 0.27
SDCBPO00560 AC007322.4-201ENST00000509611 723 ntBASIC16.76■□□□□ 0.27
SDCBPO00560 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDCBPO00560 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SDCBPO00560 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SDCBPO00560 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC16.76■□□□□ 0.27
SDCBPO00560 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC16.76■□□□□ 0.27
SDCBPO00560 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC16.76■□□□□ 0.27
SDCBPO00560 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SDCBPO00560 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
SDCBPO00560 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDCBPO00560 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDCBPO00560 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.76■□□□□ 0.27
SDCBPO00560 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.76■□□□□ 0.27
SDCBPO00560 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC16.76■□□□□ 0.27
SDCBPO00560 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDCBPO00560 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDCBPO00560 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.76■□□□□ 0.27
SDCBPO00560 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC16.75■□□□□ 0.27
SDCBPO00560 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SDCBPO00560 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC16.75■□□□□ 0.27
SDCBPO00560 VMO1-204ENST00000441199 741 ntTSL 2 BASIC16.75■□□□□ 0.27
SDCBPO00560 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC16.75■□□□□ 0.27
SDCBPO00560 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC16.75■□□□□ 0.27
SDCBPO00560 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC16.75■□□□□ 0.27
SDCBPO00560 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC16.75■□□□□ 0.27
SDCBPO00560 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
SDCBPO00560 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDCBPO00560 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms