Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.38■□□□□ 0.53
HMGN4O00479 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
HMGN4O00479 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGN4O00479 MIPEPP3-201ENST00000412105 444 ntBASIC18.38■□□□□ 0.53
HMGN4O00479 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.38■□□□□ 0.53
HMGN4O00479 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.38■□□□□ 0.53
HMGN4O00479 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGN4O00479 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGN4O00479 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
HMGN4O00479 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
HMGN4O00479 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
HMGN4O00479 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HMGN4O00479 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGN4O00479 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGN4O00479 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGN4O00479 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGN4O00479 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGN4O00479 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGN4O00479 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGN4O00479 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGN4O00479 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
HMGN4O00479 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGN4O00479 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGN4O00479 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGN4O00479 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGN4O00479 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGN4O00479 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
HMGN4O00479 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.37■□□□□ 0.53
HMGN4O00479 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.37■□□□□ 0.53
HMGN4O00479 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.37■□□□□ 0.53
HMGN4O00479 AC083906.2-201ENST00000511578 360 ntBASIC18.37■□□□□ 0.53
HMGN4O00479 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGN4O00479 AL121832.2-201ENST00000610979 668 ntBASIC18.37■□□□□ 0.53
HMGN4O00479 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.37■□□□□ 0.53
HMGN4O00479 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
HMGN4O00479 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGN4O00479 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGN4O00479 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGN4O00479 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGN4O00479 AC018553.1-201ENST00000616682 1458 ntBASIC18.37■□□□□ 0.53
HMGN4O00479 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGN4O00479 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.37■□□□□ 0.53
HMGN4O00479 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGN4O00479 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGN4O00479 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HMGN4O00479 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGN4O00479 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGN4O00479 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGN4O00479 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
HMGN4O00479 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGN4O00479 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
HMGN4O00479 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGN4O00479 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGN4O00479 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGN4O00479 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
HMGN4O00479 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
HMGN4O00479 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGN4O00479 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGN4O00479 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGN4O00479 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGN4O00479 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGN4O00479 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGN4O00479 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGN4O00479 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGN4O00479 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.36■□□□□ 0.53
HMGN4O00479 AC018445.3-201ENST00000624177 1945 ntBASIC18.36■□□□□ 0.53
HMGN4O00479 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.36■□□□□ 0.53
HMGN4O00479 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGN4O00479 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGN4O00479 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
HMGN4O00479 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGN4O00479 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGN4O00479 AC116351.2-201ENST00000606540 1585 ntBASIC18.35■□□□□ 0.53
HMGN4O00479 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGN4O00479 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGN4O00479 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HMGN4O00479 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGN4O00479 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGN4O00479 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.35■□□□□ 0.53
HMGN4O00479 AC006970.2-201ENST00000450065 779 ntBASIC18.35■□□□□ 0.53
HMGN4O00479 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGN4O00479 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGN4O00479 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGN4O00479 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGN4O00479 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGN4O00479 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGN4O00479 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGN4O00479 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGN4O00479 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGN4O00479 Z82202.1-201ENST00000623446 1880 ntBASIC18.35■□□□□ 0.53
HMGN4O00479 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HMGN4O00479 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGN4O00479 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGN4O00479 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGN4O00479 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGN4O00479 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
HMGN4O00479 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGN4O00479 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGN4O00479 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGN4O00479 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms