Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.22■□□□□ 0.83
CBX4O00257 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CBX4O00257 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.21■□□□□ 0.83
CBX4O00257 AC116351.2-201ENST00000606540 1585 ntBASIC20.21■□□□□ 0.83
CBX4O00257 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CBX4O00257 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CBX4O00257 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
CBX4O00257 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.21■□□□□ 0.83
CBX4O00257 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CBX4O00257 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.21■□□□□ 0.83
CBX4O00257 UBE2SP1-201ENST00000450587 669 ntBASIC20.21■□□□□ 0.83
CBX4O00257 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.21■□□□□ 0.83
CBX4O00257 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.21■□□□□ 0.83
CBX4O00257 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.21■□□□□ 0.83
CBX4O00257 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CBX4O00257 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.21■□□□□ 0.83
CBX4O00257 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.21■□□□□ 0.83
CBX4O00257 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.21■□□□□ 0.83
CBX4O00257 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CBX4O00257 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.21■□□□□ 0.83
CBX4O00257 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.21■□□□□ 0.83
CBX4O00257 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
CBX4O00257 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CBX4O00257 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.21■□□□□ 0.83
CBX4O00257 AL691432.2-201ENST00000607222 2038 ntBASIC20.2■□□□□ 0.83
CBX4O00257 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX4O00257 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
CBX4O00257 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX4O00257 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX4O00257 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX4O00257 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX4O00257 AC112907.3-201ENST00000577781 2400 ntBASIC20.2■□□□□ 0.82
CBX4O00257 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX4O00257 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX4O00257 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX4O00257 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.2■□□□□ 0.82
CBX4O00257 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.2■□□□□ 0.82
CBX4O00257 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CBX4O00257 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.2■□□□□ 0.82
CBX4O00257 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.2■□□□□ 0.82
CBX4O00257 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.2■□□□□ 0.82
CBX4O00257 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX4O00257 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.2■□□□□ 0.82
CBX4O00257 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CBX4O00257 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CBX4O00257 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.2■□□□□ 0.82
CBX4O00257 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX4O00257 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX4O00257 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX4O00257 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX4O00257 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.2■□□□□ 0.82
CBX4O00257 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.2■□□□□ 0.82
CBX4O00257 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.19■□□□□ 0.82
CBX4O00257 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.19■□□□□ 0.82
CBX4O00257 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CBX4O00257 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.19■□□□□ 0.82
CBX4O00257 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
CBX4O00257 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.19■□□□□ 0.82
CBX4O00257 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CBX4O00257 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CBX4O00257 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.19■□□□□ 0.82
CBX4O00257 AC133681.1-201ENST00000465482 601 ntBASIC20.19■□□□□ 0.82
CBX4O00257 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.19■□□□□ 0.82
CBX4O00257 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.19■□□□□ 0.82
CBX4O00257 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.19■□□□□ 0.82
CBX4O00257 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CBX4O00257 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.19■□□□□ 0.82
CBX4O00257 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
CBX4O00257 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX4O00257 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CBX4O00257 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CBX4O00257 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CBX4O00257 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.18■□□□□ 0.82
CBX4O00257 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CBX4O00257 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
CBX4O00257 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CBX4O00257 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
CBX4O00257 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.18■□□□□ 0.82
CBX4O00257 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CBX4O00257 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.18■□□□□ 0.82
CBX4O00257 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.18■□□□□ 0.82
CBX4O00257 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 196.8 ms