Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 FAM27E2-201ENST00000619668 403 ntBASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 HCFC2P1-201ENST00000392864 1592 ntBASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 Z93929.1-201ENST00000418200 1475 ntBASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 AL031985.1-201ENST00000392713 418 ntBASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 AC112492.2-201ENST00000432774 1030 ntBASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 LYPLA1P1-201ENST00000434514 622 ntBASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 RN7SL369P-201ENST00000477138 299 ntBASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 RPL12P31-201ENST00000478433 450 ntBASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 AC091965.3-201ENST00000506236 208 ntBASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 AC095052.1-201ENST00000509955 863 ntBASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 AL359704.2-201ENST00000604335 521 ntBASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 AC073389.3-201ENST00000609434 935 ntBASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 MIR6886-201ENST00000619864 61 ntBASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
HDDC3Q8N4P3 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 CTNNA1P1-201ENST00000515849 2728 ntBASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 OR2M1P-201ENST00000318104 951 ntBASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 NACAP7-201ENST00000407371 609 ntBASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 SLC20A1P1-201ENST00000413906 956 ntBASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 AL713922.1-201ENST00000416477 747 ntBASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 SOCS5P1-201ENST00000440415 949 ntBASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 RPL31P15-201ENST00000449770 338 ntBASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 AC098847.1-201ENST00000473094 348 ntBASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 RN7SL714P-201ENST00000487050 298 ntBASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 IGHV4-55-201ENST00000520889 368 ntBASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 AC036111.2-201ENST00000533247 901 ntBASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 MIR6768-201ENST00000610734 72 ntBASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 AC092266.1-201ENST00000610958 165 ntBASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 AC079414.3-201ENST00000612986 1090 ntBASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 AP003072.5-201ENST00000623872 773 ntBASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.4□□□□□ -1.38
HDDC3Q8N4P3 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC6.4□□□□□ -1.39
HDDC3Q8N4P3 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
HDDC3Q8N4P3 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.4□□□□□ -1.39
HDDC3Q8N4P3 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC6.4□□□□□ -1.39
HDDC3Q8N4P3 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
HDDC3Q8N4P3 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.4□□□□□ -1.39
HDDC3Q8N4P3 AC009120.2-204ENST00000621548 2032 ntBASIC6.4□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 192 ms