RNA–Protein interactions for RNA: ENST00000422395.1

CCR9-204, Transcript of C-C motif chemokine receptor 9, humanhuman

TSL 1 (best) BASIC

Gene CCR9, Length 1,331 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCR9-204ENST00000422395 AEBP2Q6ZN18 517 aaPredicted RBP22.87■■□□□ 1.25
CCR9-204ENST00000422395 CHIC1Q5VXU3 224 aa21.6■■□□□ 1.05
CCR9-204ENST00000422395 SENP3Q9H4L4 574 aaPredicted RBP19.74■□□□□ 0.75
CCR9-204ENST00000422395 PHF23Q9BUL5 403 aaPredicted RBP19.39■□□□□ 0.69
CCR9-204ENST00000422395 FOXD1Q16676 465 aa18.3■□□□□ 0.52
CCR9-204ENST00000422395 MSH5O43196 834 aa17.35■□□□□ 0.37
CCR9-204ENST00000422395 PLPPR3Q6T4P5 718 aa17.26■□□□□ 0.35
CCR9-204ENST00000422395 POTEDQ86YR6 584 aa17.2■□□□□ 0.34
CCR9-204ENST00000422395 PIAS4Q8N2W9 510 aaPredicted RBP17.19■□□□□ 0.34
CCR9-204ENST00000422395 ADRA2BP18089 450 aa16.91■□□□□ 0.3
CCR9-204ENST00000422395 PPP6R1Q9UPN7 881 aa16.89■□□□□ 0.29
CCR9-204ENST00000422395 SCAF1Q9H7N4 1312 aaKnown RBP15.65■□□□□ 0.1
CCR9-204ENST00000422395 MAPK8IP2Q13387 824 aaPredicted RBP15.57■□□□□ 0.08
CCR9-204ENST00000422395 DMRT2Q9Y5R5 561 aa15.54■□□□□ 0.08
CCR9-204ENST00000422395 DCAF8L1A6NGE4 600 aa15.14■□□□□ 0.01
CCR9-204ENST00000422395 CACNB1Q02641 598 aaPredicted RBP15.07■□□□□ 0
CCR9-204ENST00000422395 PPP4R3CPQ6ZMV5 832 aa15.06■□□□□ 0
CCR9-204ENST00000422395 HOXD11P31277 338 aaPredicted RBP14.85□□□□□ -0.03
CCR9-204ENST00000422395 CNKSR2Q8WXI2 1034 aa14.85□□□□□ -0.03
CCR9-204ENST00000422395 RNF216Q9NWF9 866 aaPredicted RBP14.74□□□□□ -0.05
CCR9-204ENST00000422395 RNF39Q9H2S5 420 aa14.68□□□□□ -0.06
CCR9-204ENST00000422395 NCBP3Q53F19 620 aaKnown RBP14.55□□□□□ -0.08
CCR9-204ENST00000422395 C1QBPQ07021 282 aaKnown RBP14.54□□□□□ -0.08
CCR9-204ENST00000422395 DNAJC5BQ9UF47 199 aa14.39□□□□□ -0.11
CCR9-204ENST00000422395 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.34□□□□□ -0.11
CCR9-204ENST00000422395 NISCHQ9Y2I1 1504 aa14.23□□□□□ -0.13
CCR9-204ENST00000422395 NPM3O75607 178 aaKnown RBP14.16□□□□□ -0.14
CCR9-204ENST00000422395 CAPN15O75808 1086 aa13.87□□□□□ -0.19
CCR9-204ENST00000422395 U3KPZ7 1027 aaPredicted RBP13.85□□□□□ -0.19
CCR9-204ENST00000422395 SPINK5Q9NQ38 1064 aaPredicted RBP13.73□□□□□ -0.21
CCR9-204ENST00000422395 KCNA4P22459 653 aa13.7□□□□□ -0.22
CCR9-204ENST00000422395 DSG3P32926 999 aa13.68□□□□□ -0.22
CCR9-204ENST00000422395 APLP2Q06481 763 aa13.68□□□□□ -0.22
CCR9-204ENST00000422395 TRHP20396 242 aaPredicted RBP13.58□□□□□ -0.24
CCR9-204ENST00000422395 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.57□□□□□ -0.24
CCR9-204ENST00000422395 HNRNPUL2Q1KMD3 747 aaKnown RBP13.57□□□□□ -0.24
CCR9-204ENST00000422395 ZNF219Q9P2Y4 722 aaPredicted RBP13.54□□□□□ -0.24
CCR9-204ENST00000422395 SLC4A2P04920 1241 aa13.52□□□□□ -0.25
CCR9-204ENST00000422395 POTEHQ6S545 545 aa13.49□□□□□ -0.25
CCR9-204ENST00000422395 ABCB7O75027 752 aa13.46□□□□□ -0.25
CCR9-204ENST00000422395 SAMD1Q6SPF0 538 aaPredicted RBP13.44□□□□□ -0.26
CCR9-204ENST00000422395 RBM42Q9BTD8 480 aaKnown RBP13.22□□□□□ -0.29
CCR9-204ENST00000422395 MYCNP04198 464 aaPredicted RBP13.2□□□□□ -0.3
CCR9-204ENST00000422395 POLA2Q14181 598 aa13.1□□□□□ -0.31
CCR9-204ENST00000422395 SLC4A1APQ9BWU0 796 aaKnown RBP12.99□□□□□ -0.33
CCR9-204ENST00000422395 CHRDL2Q6WN34 429 aa12.93□□□□□ -0.34
CCR9-204ENST00000422395 FOXD4L1Q9NU39 408 aa12.93□□□□□ -0.34
CCR9-204ENST00000422395 ZBTB12Q9Y330 459 aaPredicted RBP12.91□□□□□ -0.34
CCR9-204ENST00000422395 CCDC180Q9P1Z9 1646 aa12.87□□□□□ -0.35
CCR9-204ENST00000422395 ABCC9O60706 1549 aa12.83□□□□□ -0.36
CCR9-204ENST00000422395 AKT1S1Q96B36 256 aa12.8□□□□□ -0.36
CCR9-204ENST00000422395 ATF5Q9Y2D1 282 aaPredicted RBP12.76□□□□□ -0.37
CCR9-204ENST00000422395 OSCARQ8IYS5 282 aa12.69□□□□□ -0.38
CCR9-204ENST00000422395 REM2Q8IYK8 340 aaPredicted RBP12.64□□□□□ -0.39
CCR9-204ENST00000422395 SP7Q8TDD2 431 aaPredicted RBP12.55□□□□□ -0.4
CCR9-204ENST00000422395 ATXN8OSP0DMR3 200 aa12.54□□□□□ -0.4
CCR9-204ENST00000422395 PIP4P2Q8N4L2 257 aa12.54□□□□□ -0.4
CCR9-204ENST00000422395 FBLN2P98095 1184 aa12.53□□□□□ -0.4
CCR9-204ENST00000422395 PITPNM1O00562 1244 aa12.5□□□□□ -0.41
CCR9-204ENST00000422395 ZBTB22O15209 634 aa12.5□□□□□ -0.41
CCR9-204ENST00000422395 HAX1O00165 279 aa12.49□□□□□ -0.41
CCR9-204ENST00000422395 SPDYE2BA6NHP3 402 aa12.42□□□□□ -0.42
CCR9-204ENST00000422395 SPDYE6P0CI01 402 aa12.42□□□□□ -0.42
CCR9-204ENST00000422395 SPDYE2Q495Y8 402 aa12.42□□□□□ -0.42
CCR9-204ENST00000422395 FXR2P51116 673 aaKnown RBP eCLIP12.38□□□□□ -0.43
CCR9-204ENST00000422395 EHMT2Q96KQ7 1210 aa12.37□□□□□ -0.43
CCR9-204ENST00000422395 CLEC11AQ9Y240 323 aa12.34□□□□□ -0.43
CCR9-204ENST00000422395 SPDYE1Q8NFV5 336 aaPredicted RBP12.31□□□□□ -0.44
CCR9-204ENST00000422395 ZNF692Q9BU19 519 aaPredicted RBP12.28□□□□□ -0.44
CCR9-204ENST00000422395 RB1CC1Q8TDY2 1594 aa12.24□□□□□ -0.45
CCR9-204ENST00000422395 PRKAR2AP13861 404 aaKnown RBP12.23□□□□□ -0.45
CCR9-204ENST00000422395 MKRN4PQ13434 485 aaPredicted RBP12.16□□□□□ -0.46
CCR9-204ENST00000422395 SSUH2Q9Y2M2 353 aa12.14□□□□□ -0.47
CCR9-204ENST00000422395 NACADO15069 1562 aa12.13□□□□□ -0.47
CCR9-204ENST00000422395 CSRNP3Q8WYN3 585 aa12.12□□□□□ -0.47
CCR9-204ENST00000422395 EVX2Q03828 476 aa12.1□□□□□ -0.47
CCR9-204ENST00000422395 PRR29P0C7W0 189 aa12.08□□□□□ -0.48
CCR9-204ENST00000422395 PABPN1Q86U42 306 aaKnown RBP eCLIP12.06□□□□□ -0.48
CCR9-204ENST00000422395 UNC13AQ9UPW8 1703 aa12.03□□□□□ -0.48
CCR9-204ENST00000422395 CHADLQ6NUI6 762 aa12.02□□□□□ -0.49
CCR9-204ENST00000422395 C19orf67A6NJJ6 358 aa12.01□□□□□ -0.49
CCR9-204ENST00000422395 DCAF8L2P0C7V8 631 aa11.99□□□□□ -0.49
CCR9-204ENST00000422395 MYO15BQ96JP2 1530 aa11.92□□□□□ -0.5
CCR9-204ENST00000422395 GABBR2O75899 941 aa11.92□□□□□ -0.5
CCR9-204ENST00000422395 BICRAQ9NZM4 1560 aa11.86□□□□□ -0.51
CCR9-204ENST00000422395 CD44P16070 742 aaKnown RBP11.85□□□□□ -0.51
CCR9-204ENST00000422395 FARP1Q9Y4F1 1045 aaPredicted RBP11.83□□□□□ -0.52
CCR9-204ENST00000422395 ZCCHC6Q5VYS8 1495 aaKnown RBP11.8□□□□□ -0.52
CCR9-204ENST00000422395 LHX8Q68G74 356 aa11.79□□□□□ -0.52
CCR9-204ENST00000422395 DCAF1Q9Y4B6 1507 aa11.76□□□□□ -0.53
CCR9-204ENST00000422395 STAG3Q9UJ98 1225 aa11.76□□□□□ -0.53
CCR9-204ENST00000422395 CLCN6P51797 869 aa11.75□□□□□ -0.53
CCR9-204ENST00000422395 SHROOM4Q9ULL8 1493 aa11.71□□□□□ -0.53
CCR9-204ENST00000422395 SCRIBQ14160 1630 aa11.7□□□□□ -0.54
CCR9-204ENST00000422395 DCBLD2Q96PD2 775 aa11.7□□□□□ -0.54
CCR9-204ENST00000422395 ZRANB1Q9UGI0 708 aa11.66□□□□□ -0.54
CCR9-204ENST00000422395 PAK3O75914 559 aaPredicted RBP11.64□□□□□ -0.55
CCR9-204ENST00000422395 SPDYE4A6NLX3 237 aa11.63□□□□□ -0.55
CCR9-204ENST00000422395 CC2D2AQ9P2K1 1620 aa11.62□□□□□ -0.55
CCR9-204ENST00000422395 ZNF579Q8NAF0 562 aaKnown RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms