RNA–Protein interactions for RNA: ENST00000539563.5

LSAMP-207, Transcript of limbic system associated membrane protein, humanhuman

TSL 3 BASIC

Gene LSAMP, Length 8,821 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-207ENST00000539563 DCAF8L2P0C7V8 631 aa11.1□□□□□ -0.63
LSAMP-207ENST00000539563 NISCHQ9Y2I1 1504 aa10.75□□□□□ -0.69
LSAMP-207ENST00000539563 SUPT5HO00267 1087 aaKnown RBP10.51□□□□□ -0.73
LSAMP-207ENST00000539563 SHROOM4Q9ULL8 1493 aa10.33□□□□□ -0.76
LSAMP-207ENST00000539563 PELP1Q8IZL8 1130 aaKnown RBP10.25□□□□□ -0.77
LSAMP-207ENST00000539563 APLP2Q06481 763 aa10.19□□□□□ -0.78
LSAMP-207ENST00000539563 FAM9AQ8IZU1 332 aaPredicted RBP10.15□□□□□ -0.78
LSAMP-207ENST00000539563 EHMT2Q96KQ7 1210 aa10.12□□□□□ -0.79
LSAMP-207ENST00000539563 ZEB1P37275 1124 aaPredicted RBP9.89□□□□□ -0.83
LSAMP-207ENST00000539563 TRIM41Q8WV44 630 aa9.83□□□□□ -0.84
LSAMP-207ENST00000539563 PCGF6Q9BYE7 350 aa9.82□□□□□ -0.84
LSAMP-207ENST00000539563 CENPBP07199 599 aaPredicted RBP9.81□□□□□ -0.84
LSAMP-207ENST00000539563 CCER1Q8TC90 406 aaPredicted RBP9.81□□□□□ -0.84
LSAMP-207ENST00000539563 TTBK1Q5TCY1 1321 aaPredicted RBP9.79□□□□□ -0.84
LSAMP-207ENST00000539563 ATP1B4Q9UN42 357 aaPredicted RBP9.77□□□□□ -0.85
LSAMP-207ENST00000539563 ERICH6Q7L0X2 663 aa9.76□□□□□ -0.85
LSAMP-207ENST00000539563 UBTFP17480 764 aaKnown RBP9.73□□□□□ -0.85
LSAMP-207ENST00000539563 RANGAP1P46060 587 aaPredicted RBP9.73□□□□□ -0.85
LSAMP-207ENST00000539563 NEFLP07196 543 aa9.63□□□□□ -0.87
LSAMP-207ENST00000539563 TRIM26Q12899 539 aaPredicted RBP9.53□□□□□ -0.88
LSAMP-207ENST00000539563 MYT1Q01538 1121 aa9.52□□□□□ -0.89
LSAMP-207ENST00000539563 YTHDC1Q96MU7 727 aaKnown RBP9.44□□□□□ -0.9
LSAMP-207ENST00000539563 MYT1LQ9UL68 1186 aa9.43□□□□□ -0.9
LSAMP-207ENST00000539563 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.41□□□□□ -0.9
LSAMP-207ENST00000539563 HNRNPUL2Q1KMD3 747 aaKnown RBP9.41□□□□□ -0.9
LSAMP-207ENST00000539563 PPARGC1BQ86YN6 1023 aaKnown RBP9.41□□□□□ -0.9
LSAMP-207ENST00000539563 DAXXQ9UER7 740 aaPredicted RBP9.39□□□□□ -0.91
LSAMP-207ENST00000539563 ITGAEP38570 1179 aa9.36□□□□□ -0.91
LSAMP-207ENST00000539563 POLR3GLQ9BT43 218 aa9.33□□□□□ -0.92
LSAMP-207ENST00000539563 HRCP23327 699 aa9.32□□□□□ -0.92
LSAMP-207ENST00000539563 CHIC1Q5VXU3 224 aa9.29□□□□□ -0.92
LSAMP-207ENST00000539563 LOC105371045A0A1W2PR82 267 aa9.28□□□□□ -0.92
LSAMP-207ENST00000539563 SLC4A1APQ9BWU0 796 aaKnown RBP9.23□□□□□ -0.93
LSAMP-207ENST00000539563 ABCC9O60706 1549 aa9.2□□□□□ -0.94
LSAMP-207ENST00000539563 FAM50AQ14320 339 aaKnown RBP9.2□□□□□ -0.94
LSAMP-207ENST00000539563 DIEXFQ68CQ4 756 aaKnown RBP9.17□□□□□ -0.94
LSAMP-207ENST00000539563 CNGB1Q14028 1251 aaPredicted RBP9.15□□□□□ -0.94
LSAMP-207ENST00000539563 TRIM52Q96A61 297 aa9.15□□□□□ -0.94
LSAMP-207ENST00000539563 ZNF316A6NFI3 1004 aaPredicted RBP9.15□□□□□ -0.95
LSAMP-207ENST00000539563 CLSPNQ9HAW4 1339 aa9.14□□□□□ -0.95
LSAMP-207ENST00000539563 PABPN1Q86U42 306 aaKnown RBP eCLIP9.11□□□□□ -0.95
LSAMP-207ENST00000539563 RTL5Q5HYW3 569 aaPredicted RBP9.1□□□□□ -0.95
LSAMP-207ENST00000539563 NEUROD1Q13562 356 aa9.08□□□□□ -0.96
LSAMP-207ENST00000539563 ANP32CO43423 234 aa9.08□□□□□ -0.96
LSAMP-207ENST00000539563 ZBTB47Q9UFB7 747 aaPredicted RBP9.05□□□□□ -0.96
LSAMP-207ENST00000539563 CCDC180Q9P1Z9 1646 aa9.02□□□□□ -0.96
LSAMP-207ENST00000539563 CDK11AQ9UQ88 783 aaPredicted RBP9.01□□□□□ -0.97
LSAMP-207ENST00000539563 FBLN2P98095 1184 aa9□□□□□ -0.97
LSAMP-207ENST00000539563 NEFMP07197 916 aa8.99□□□□□ -0.97
LSAMP-207ENST00000539563 SCRIBQ14160 1630 aa8.99□□□□□ -0.97
LSAMP-207ENST00000539563 ZNF326Q5BKZ1 582 aaKnown RBP8.97□□□□□ -0.97
LSAMP-207ENST00000539563 CSRNP3Q8WYN3 585 aa8.94□□□□□ -0.98
LSAMP-207ENST00000539563 CANXP27824 592 aaKnown RBP8.94□□□□□ -0.98
LSAMP-207ENST00000539563 BCANQ96GW7 911 aa8.93□□□□□ -0.98
LSAMP-207ENST00000539563 SLC24A1O60721 1099 aa8.91□□□□□ -0.98
LSAMP-207ENST00000539563 P3H3Q8IVL6 736 aa8.9□□□□□ -0.99
LSAMP-207ENST00000539563 GTF3C3Q9Y5Q9 886 aa8.9□□□□□ -0.99
LSAMP-207ENST00000539563 ZCCHC6Q5VYS8 1495 aaKnown RBP8.88□□□□□ -0.99
LSAMP-207ENST00000539563 ESF1Q9H501 851 aaKnown RBP8.86□□□□□ -0.99
LSAMP-207ENST00000539563 ZNF777Q9ULD5 760 aaPredicted RBP8.86□□□□□ -0.99
LSAMP-207ENST00000539563 ANP32AP39687 249 aaKnown RBP8.85□□□□□ -0.99
LSAMP-207ENST00000539563 TONSLQ96HA7 1378 aa8.84□□□□□ -0.99
LSAMP-207ENST00000539563 DCAF1Q9Y4B6 1507 aa8.84□□□□□ -0.99
LSAMP-207ENST00000539563 NPM1P06748 294 aaKnown RBP eCLIP8.82□□□□□ -1
LSAMP-207ENST00000539563 RB1CC1Q8TDY2 1594 aa8.81□□□□□ -1
LSAMP-207ENST00000539563 STAG3Q9UJ98 1225 aa8.81□□□□□ -1
LSAMP-207ENST00000539563 ARID3CA6NKF2 412 aa8.81□□□□□ -1
LSAMP-207ENST00000539563 ACIN1Q9UKV3 1341 aaKnown RBP8.79□□□□□ -1
LSAMP-207ENST00000539563 UPF2Q9HAU5 1272 aaKnown RBP8.77□□□□□ -1.01
LSAMP-207ENST00000539563 BCL11AQ9H165 835 aa8.77□□□□□ -1.01
LSAMP-207ENST00000539563 CHGAP10645 457 aaKnown RBP8.77□□□□□ -1.01
LSAMP-207ENST00000539563 ANP32BQ92688 251 aaKnown RBP8.76□□□□□ -1.01
LSAMP-207ENST00000539563 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.75□□□□□ -1.01
LSAMP-207ENST00000539563 HSP90AA1P07900 732 aaKnown RBP8.73□□□□□ -1.01
LSAMP-207ENST00000539563 TMC1Q8TDI8 760 aa8.72□□□□□ -1.01
LSAMP-207ENST00000539563 TSPY4P0CV99 314 aa8.72□□□□□ -1.01
LSAMP-207ENST00000539563 TSPY10P0CW01 314 aa8.72□□□□□ -1.01
LSAMP-207ENST00000539563 HNRNPUQ00839 825 aaKnown RBP eCLIP8.71□□□□□ -1.01
LSAMP-207ENST00000539563 MTUS2Q5JR59 1369 aa8.71□□□□□ -1.01
LSAMP-207ENST00000539563 NACADO15069 1562 aa8.71□□□□□ -1.01
LSAMP-207ENST00000539563 NPM2Q86SE8 214 aaKnown RBP8.71□□□□□ -1.02
LSAMP-207ENST00000539563 FKBP8Q14318 412 aa8.71□□□□□ -1.02
LSAMP-207ENST00000539563 WDR43Q15061 677 aaKnown RBP eCLIP8.7□□□□□ -1.02
LSAMP-207ENST00000539563 EEA1Q15075 1411 aa8.69□□□□□ -1.02
LSAMP-207ENST00000539563 DDX10Q13206 875 aaKnown RBP8.69□□□□□ -1.02
LSAMP-207ENST00000539563 FAM9BQ8IZU0 186 aa8.69□□□□□ -1.02
LSAMP-207ENST00000539563 RSF1Q96T23 1441 aaPredicted RBP8.69□□□□□ -1.02
LSAMP-207ENST00000539563 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.69□□□□□ -1.02
LSAMP-207ENST00000539563 CHMP7Q8WUX9 453 aaPredicted RBP8.68□□□□□ -1.02
LSAMP-207ENST00000539563 GOLGA3Q08378 1498 aa8.66□□□□□ -1.02
LSAMP-207ENST00000539563 CHIC2Q9UKJ5 165 aa8.66□□□□□ -1.02
LSAMP-207ENST00000539563 CLIP1P30622 1438 aa8.65□□□□□ -1.02
LSAMP-207ENST00000539563 CCDC136Q96JN2 1154 aa8.65□□□□□ -1.03
LSAMP-207ENST00000539563 KDM2AQ9Y2K7 1162 aa8.63□□□□□ -1.03
LSAMP-207ENST00000539563 EIF4G2P78344 907 aaKnown RBP eCLIP8.63□□□□□ -1.03
LSAMP-207ENST00000539563 SALL2Q9Y467 1007 aaPredicted RBP8.62□□□□□ -1.03
LSAMP-207ENST00000539563 PLPPR3Q6T4P5 718 aa8.62□□□□□ -1.03
LSAMP-207ENST00000539563 MYH16Q9H6N6 1097 aa8.62□□□□□ -1.03
LSAMP-207ENST00000539563 BAZ1BQ9UIG0 1483 aaKnown RBP8.61□□□□□ -1.03
LSAMP-207ENST00000539563 MRS2Q9HD23 443 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms