Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC8.62□□□□□ -1.03
VPS9D1Q9Y2B5 ZNF611-203ENST00000540744 4417 ntAPPRIS P1 TSL 4 BASIC8.62□□□□□ -1.03
VPS9D1Q9Y2B5 BUB1B-201ENST00000287598 3725 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
VPS9D1Q9Y2B5 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC8.62□□□□□ -1.03
VPS9D1Q9Y2B5 FAH-204ENST00000539156 3427 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 PARP9-201ENST00000360356 3198 ntAPPRIS P3 TSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 USP14-201ENST00000261601 4921 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 LINC01695-203ENST00000453420 4486 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 MCM8-202ENST00000378883 3574 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 XRCC5-202ENST00000392133 3761 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 SH3D19-202ENST00000409252 4888 ntAPPRIS P3 TSL 5 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 BTBD3-214ENST00000618296 4582 ntAPPRIS ALT1 TSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 PPARGC1A-206ENST00000507380 2385 ntTSL 2 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 BRDT-204ENST00000394530 3207 ntTSL 2 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 CHRDL1-201ENST00000372042 1934 ntAPPRIS ALT1 TSL 2 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AC005294.1-201ENST00000355509 281 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 Y_RNA.28-201ENST00000362554 111 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 RNU5E-8P-201ENST00000363502 116 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 MIR25-201ENST00000384816 84 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 LINC02449-202ENST00000399866 517 ntTSL 3 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 RPL36P2-201ENST00000426026 315 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AL627308.1-201ENST00000435693 821 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 RPE-210ENST00000438204 796 ntTSL 2 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AL451164.3-201ENST00000441377 447 ntTSL 5 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AC243962.1-201ENST00000441512 579 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 MTND6P13-201ENST00000443510 523 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 RPE-213ENST00000445268 668 ntTSL 5 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AL512649.2-201ENST00000446206 597 ntTSL 3 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 RBMY2OP-201ENST00000447105 810 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AC023137.1-201ENST00000448241 308 ntTSL 4 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 RAB28P3-201ENST00000448325 597 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AC092634.4-203ENST00000451395 448 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 GAPDHP45-201ENST00000452090 349 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 EIF3LP2-201ENST00000457262 807 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 SNX5P1-201ENST00000505757 1041 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AC106795.1-207ENST00000507037 1123 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 MIR3945HG-202ENST00000511703 729 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AC103409.1-202ENST00000518416 577 ntTSL 4 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AC107953.1-201ENST00000522216 297 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 SAP30L-AS1-204ENST00000524264 1039 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 OR7E8P-201ENST00000532847 1000 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AP001257.1-201ENST00000533106 385 ntTSL 3 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 MIR4666A-201ENST00000580160 79 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 LINC01515-209ENST00000599409 755 ntTSL 5 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AC005014.2-201ENST00000607795 599 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AC012640.3-201ENST00000607847 430 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AC084781.2-201ENST00000615568 161 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AL356481.2-201ENST00000629902 528 ntTSL 3 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 KIF2B-201ENST00000268919 2313 ntAPPRIS P1 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 TRIM60P19-201ENST00000452879 1462 ntBASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 GPD2-202ENST00000409125 2661 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 RCAN1-208ENST00000482533 2686 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 HPS5-201ENST00000349215 4491 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 IKZF2-202ENST00000374319 2001 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 CRNKL1-202ENST00000377340 4406 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 PTBP3-205ENST00000374257 7240 ntAPPRIS ALT1 TSL 2 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 AC005863.1-201ENST00000379640 2998 ntTSL 2 BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 SLC24A2-201ENST00000286344 2170 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
VPS9D1Q9Y2B5 ENY2-211ENST00000521688 2922 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 TAGAP-203ENST00000367066 3887 ntAPPRIS P4 TSL 1 (best) BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 ADAM2-205ENST00000521880 2125 ntAPPRIS ALT2 TSL 2 BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 AMBN-202ENST00000449493 1512 ntAPPRIS ALT2 TSL 5 BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 LCA5-201ENST00000369846 4542 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 AC107959.2-201ENST00000501897 2636 ntTSL 2 BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 TMEM68-201ENST00000334667 2401 ntTSL 2 BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 ENOX2-207ENST00000610637 2422 ntTSL 5 BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 HCG18-238ENST00000449544 4262 ntTSL 2 BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 PDZK1-202ENST00000417171 2230 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 HGD-201ENST00000283871 2005 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 THOC5-216ENST00000490103 4753 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 AC211476.4-201ENST00000275546 699 ntBASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 RNA5SP74-201ENST00000363538 109 ntBASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 PMS2P5-201ENST00000398065 516 ntBASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 RFKP1-201ENST00000400940 428 ntBASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 SEM1-203ENST00000413065 661 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 RPL37P21-201ENST00000435890 276 ntBASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 AC104634.1-201ENST00000452720 462 ntBASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 ENPP7P2-201ENST00000462675 943 ntBASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 AF305872.1-201ENST00000485217 471 ntBASIC8.6□□□□□ -1.03
VPS9D1Q9Y2B5 AC068531.1-201ENST00000502398 195 ntBASIC8.6□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms