Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 TMSB4XP2-201ENST00000335179 210 ntBASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 VN1R110P-201ENST00000438988 971 ntBASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 AC011225.1-201ENST00000457751 369 ntBASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 AC092824.1-201ENST00000483524 576 ntBASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 AC020916.2-201ENST00000591242 360 ntBASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 AC106872.5-201ENST00000508856 1416 ntBASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 SNORA74A-201ENST00000364089 198 ntBASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 AL354890.1-201ENST00000413730 346 ntBASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 AC004808.2-201ENST00000627965 773 ntBASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC11.82□□□□□ -0.52
SHROOM4Q9ULL8 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 AC109780.1-201ENST00000451768 1344 ntBASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 AL157831.2-201ENST00000564681 3095 ntBASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 CAST-204ENST00000341926 2487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 RN7SL610P-201ENST00000463845 291 ntBASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 DCN-209ENST00000546745 1026 ntTSL 3 BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 MYL6-213ENST00000549017 502 ntTSL 3 BASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 AL589674.2-201ENST00000604304 337 ntBASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 AL136228.1-201ENST00000622221 319 ntBASIC11.81□□□□□ -0.52
SHROOM4Q9ULL8 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 AL590763.1-201ENST00000398297 1545 ntBASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 Y_RNA.710-201ENST00000516975 110 ntBASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 IGHVIII-13-1-201ENST00000517613 291 ntBASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 AC022404.1-201ENST00000555320 273 ntBASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SHROOM4Q9ULL8 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 AC136624.1-201ENST00000400791 413 ntBASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 EIF4A1P6-201ENST00000448133 1210 ntBASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 AC092865.4-201ENST00000477936 615 ntBASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 RN7SL826P-201ENST00000479724 288 ntBASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 SETP21-201ENST00000514799 892 ntBASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 IGKV1D-22-201ENST00000518953 324 ntBASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 AC092865.1-201ENST00000544395 1023 ntBASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 AP005119.1-201ENST00000580956 292 ntBASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 AC027229.1-201ENST00000583887 253 ntBASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 MIR7159-201ENST00000620587 66 ntBASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 TNPO1P2-201ENST00000426249 2665 ntBASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC11.79□□□□□ -0.52
SHROOM4Q9ULL8 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC11.78□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms