RNA–Protein interactions for RNA: ENST00000610556.4

SYNPO2-206, Transcript of synaptopodin 2, humanhuman

TSL 1 (best) BASIC

Gene SYNPO2, Length 3,934 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO2-206ENST00000610556 NISCHQ9Y2I1 1504 aa12.73□□□□□ -0.37
SYNPO2-206ENST00000610556 DCAF8L2P0C7V8 631 aa11.9□□□□□ -0.51
SYNPO2-206ENST00000610556 SHROOM4Q9ULL8 1493 aa11.82□□□□□ -0.52
SYNPO2-206ENST00000610556 SUPT5HO00267 1087 aaKnown RBP11.82□□□□□ -0.52
SYNPO2-206ENST00000610556 CCDC180Q9P1Z9 1646 aa11.34□□□□□ -0.59
SYNPO2-206ENST00000610556 PCGF6Q9BYE7 350 aa11.24□□□□□ -0.61
SYNPO2-206ENST00000610556 EHMT2Q96KQ7 1210 aa11.21□□□□□ -0.62
SYNPO2-206ENST00000610556 FAM9AQ8IZU1 332 aaPredicted RBP11.06□□□□□ -0.64
SYNPO2-206ENST00000610556 CHIC1Q5VXU3 224 aa11.04□□□□□ -0.64
SYNPO2-206ENST00000610556 LOC105371045A0A1W2PR82 267 aa10.97□□□□□ -0.65
SYNPO2-206ENST00000610556 HRCP23327 699 aa10.96□□□□□ -0.65
SYNPO2-206ENST00000610556 PPARGC1BQ86YN6 1023 aaKnown RBP10.9□□□□□ -0.66
SYNPO2-206ENST00000610556 TRIM41Q8WV44 630 aa10.87□□□□□ -0.67
SYNPO2-206ENST00000610556 TTBK1Q5TCY1 1321 aaPredicted RBP10.83□□□□□ -0.68
SYNPO2-206ENST00000610556 TRIM26Q12899 539 aaPredicted RBP10.75□□□□□ -0.69
SYNPO2-206ENST00000610556 ZCCHC6Q5VYS8 1495 aaKnown RBP10.74□□□□□ -0.69
SYNPO2-206ENST00000610556 DCAF1Q9Y4B6 1507 aa10.68□□□□□ -0.7
SYNPO2-206ENST00000610556 ZEB1P37275 1124 aaPredicted RBP10.66□□□□□ -0.7
SYNPO2-206ENST00000610556 MYO15BQ96JP2 1530 aa10.65□□□□□ -0.7
SYNPO2-206ENST00000610556 CCER1Q8TC90 406 aaPredicted RBP10.64□□□□□ -0.71
SYNPO2-206ENST00000610556 RANGAP1P46060 587 aaPredicted RBP10.57□□□□□ -0.72
SYNPO2-206ENST00000610556 UBTFP17480 764 aaKnown RBP10.53□□□□□ -0.72
SYNPO2-206ENST00000610556 UNC13AQ9UPW8 1703 aa10.52□□□□□ -0.72
SYNPO2-206ENST00000610556 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.5□□□□□ -0.73
SYNPO2-206ENST00000610556 APLP2Q06481 763 aa10.49□□□□□ -0.73
SYNPO2-206ENST00000610556 YTHDC1Q96MU7 727 aaKnown RBP10.42□□□□□ -0.74
SYNPO2-206ENST00000610556 CENPBP07199 599 aaPredicted RBP10.42□□□□□ -0.74
SYNPO2-206ENST00000610556 ABCC9O60706 1549 aa10.4□□□□□ -0.74
SYNPO2-206ENST00000610556 NACADO15069 1562 aa10.38□□□□□ -0.75
SYNPO2-206ENST00000610556 HNRNPUL2Q1KMD3 747 aaKnown RBP10.35□□□□□ -0.75
SYNPO2-206ENST00000610556 SCRIBQ14160 1630 aa10.32□□□□□ -0.76
SYNPO2-206ENST00000610556 PELP1Q8IZL8 1130 aaKnown RBP10.32□□□□□ -0.76
SYNPO2-206ENST00000610556 DIEXFQ68CQ4 756 aaKnown RBP10.3□□□□□ -0.76
SYNPO2-206ENST00000610556 PABPN1Q86U42 306 aaKnown RBP eCLIP10.27□□□□□ -0.77
SYNPO2-206ENST00000610556 RSF1Q96T23 1441 aaPredicted RBP10.27□□□□□ -0.77
SYNPO2-206ENST00000610556 BICRAQ9NZM4 1560 aa10.25□□□□□ -0.77
SYNPO2-206ENST00000610556 RB1CC1Q8TDY2 1594 aa10.23□□□□□ -0.77
SYNPO2-206ENST00000610556 ATP1B4Q9UN42 357 aaPredicted RBP10.22□□□□□ -0.77
SYNPO2-206ENST00000610556 ITGAEP38570 1179 aa10.2□□□□□ -0.78
SYNPO2-206ENST00000610556 GTF3C3Q9Y5Q9 886 aa10.19□□□□□ -0.78
SYNPO2-206ENST00000610556 SCAF1Q9H7N4 1312 aaKnown RBP10.17□□□□□ -0.78
SYNPO2-206ENST00000610556 CSRNP3Q8WYN3 585 aa10.15□□□□□ -0.78
SYNPO2-206ENST00000610556 ACIN1Q9UKV3 1341 aaKnown RBP10.14□□□□□ -0.79
SYNPO2-206ENST00000610556 NEUROD1Q13562 356 aa10.12□□□□□ -0.79
SYNPO2-206ENST00000610556 CECR2Q9BXF3 1484 aa10.1□□□□□ -0.79
SYNPO2-206ENST00000610556 ZNF316A6NFI3 1004 aaPredicted RBP10.1□□□□□ -0.79
SYNPO2-206ENST00000610556 MYT1Q01538 1121 aa10.01□□□□□ -0.81
SYNPO2-206ENST00000610556 MROH2BQ7Z745 1585 aa9.97□□□□□ -0.81
SYNPO2-206ENST00000610556 CEP162Q5TB80 1403 aa9.97□□□□□ -0.81
SYNPO2-206ENST00000610556 MIER1Q8N108 512 aa9.95□□□□□ -0.82
SYNPO2-206ENST00000610556 FAM50AQ14320 339 aaKnown RBP9.94□□□□□ -0.82
SYNPO2-206ENST00000610556 NEFLP07196 543 aa9.93□□□□□ -0.82
SYNPO2-206ENST00000610556 SOGA1O94964 1423 aa9.92□□□□□ -0.82
SYNPO2-206ENST00000610556 PEG3Q9GZU2 1588 aa9.91□□□□□ -0.82
SYNPO2-206ENST00000610556 BCANQ96GW7 911 aa9.9□□□□□ -0.82
SYNPO2-206ENST00000610556 P3H3Q8IVL6 736 aa9.89□□□□□ -0.83
SYNPO2-206ENST00000610556 CCDC88BA6NC98 1476 aa9.88□□□□□ -0.83
SYNPO2-206ENST00000610556 TNIKQ9UKE5 1360 aa9.87□□□□□ -0.83
SYNPO2-206ENST00000610556 ABCC8Q09428 1581 aa9.87□□□□□ -0.83
SYNPO2-206ENST00000610556 CLIP1P30622 1438 aa9.87□□□□□ -0.83
SYNPO2-206ENST00000610556 SMARCA4P51532 1647 aa9.86□□□□□ -0.83
SYNPO2-206ENST00000610556 CNGB1Q14028 1251 aaPredicted RBP9.85□□□□□ -0.83
SYNPO2-206ENST00000610556 WIZO95785 1651 aa9.85□□□□□ -0.83
SYNPO2-206ENST00000610556 WRNQ14191 1432 aaPredicted RBP eCLIP9.84□□□□□ -0.83
SYNPO2-206ENST00000610556 GOLGA3Q08378 1498 aa9.83□□□□□ -0.84
SYNPO2-206ENST00000610556 BAZ1AQ9NRL2 1556 aaPredicted RBP9.82□□□□□ -0.84
SYNPO2-206ENST00000610556 ERICH6Q7L0X2 663 aa9.8□□□□□ -0.84
SYNPO2-206ENST00000610556 EIF4G1Q04637 1599 aaKnown RBP9.8□□□□□ -0.84
SYNPO2-206ENST00000610556 EEA1Q15075 1411 aa9.8□□□□□ -0.84
SYNPO2-206ENST00000610556 POLR3GLQ9BT43 218 aa9.78□□□□□ -0.84
SYNPO2-206ENST00000610556 DDX10Q13206 875 aaKnown RBP9.77□□□□□ -0.85
SYNPO2-206ENST00000610556 RUSC2Q8N2Y8 1516 aa9.77□□□□□ -0.85
SYNPO2-206ENST00000610556 HIRIP3Q9BW71 556 aaPredicted RBP9.76□□□□□ -0.85
SYNPO2-206ENST00000610556 CEP164Q9UPV0 1460 aa9.73□□□□□ -0.85
SYNPO2-206ENST00000610556 TRIM52Q96A61 297 aa9.73□□□□□ -0.85
SYNPO2-206ENST00000610556 ANP32CO43423 234 aa9.73□□□□□ -0.85
SYNPO2-206ENST00000610556 ARID3CA6NKF2 412 aa9.73□□□□□ -0.85
SYNPO2-206ENST00000610556 FKBP8Q14318 412 aa9.71□□□□□ -0.86
SYNPO2-206ENST00000610556 KANK4Q5T7N3 995 aaPredicted RBP9.7□□□□□ -0.86
SYNPO2-206ENST00000610556 BAZ1BQ9UIG0 1483 aaKnown RBP9.68□□□□□ -0.86
SYNPO2-206ENST00000610556 TOP2AP11388 1531 aaKnown RBP9.67□□□□□ -0.86
SYNPO2-206ENST00000610556 VPS8Q8N3P4 1428 aa9.66□□□□□ -0.86
SYNPO2-206ENST00000610556 SIN3AQ96ST3 1273 aa9.66□□□□□ -0.86
SYNPO2-206ENST00000610556 HMGXB3Q12766 1538 aa9.63□□□□□ -0.87
SYNPO2-206ENST00000610556 ZNF326Q5BKZ1 582 aaKnown RBP9.63□□□□□ -0.87
SYNPO2-206ENST00000610556 PRDM2Q13029 1718 aa9.62□□□□□ -0.87
SYNPO2-206ENST00000610556 CHIC2Q9UKJ5 165 aa9.62□□□□□ -0.87
SYNPO2-206ENST00000610556 RAPGEF2Q9Y4G8 1499 aa9.62□□□□□ -0.87
SYNPO2-206ENST00000610556 SMARCA2P51531 1590 aa9.61□□□□□ -0.87
SYNPO2-206ENST00000610556 TONSLQ96HA7 1378 aa9.61□□□□□ -0.87
SYNPO2-206ENST00000610556 SUPT16HQ9Y5B9 1047 aaKnown RBP9.61□□□□□ -0.87
SYNPO2-206ENST00000610556 CC2D2AQ9P2K1 1620 aa9.6□□□□□ -0.87
SYNPO2-206ENST00000610556 KIF27Q86VH2 1401 aa9.6□□□□□ -0.87
SYNPO2-206ENST00000610556 HNRNPUQ00839 825 aaKnown RBP eCLIP9.6□□□□□ -0.87
SYNPO2-206ENST00000610556 ATAD2BQ9ULI0 1458 aa9.59□□□□□ -0.87
SYNPO2-206ENST00000610556 CCNB3Q8WWL7 1395 aa9.58□□□□□ -0.88
SYNPO2-206ENST00000610556 IRX6P78412 446 aaPredicted RBP9.58□□□□□ -0.88
SYNPO2-206ENST00000610556 CLSPNQ9HAW4 1339 aa9.58□□□□□ -0.88
SYNPO2-206ENST00000610556 KCNH8Q96L42 1107 aa9.56□□□□□ -0.88
SYNPO2-206ENST00000610556 NCAPD3P42695 1498 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 135.5 ms