RNA–Protein interactions for RNA: ENST00000493795.5

BRCA1-221, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 5,732 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-221ENST00000493795 PELP1Q8IZL8 1130 aaKnown RBP13.01□□□□□ -0.33
BRCA1-221ENST00000493795 DCAF8L2P0C7V8 631 aa12.96□□□□□ -0.34
BRCA1-221ENST00000493795 ERICH6Q7L0X2 663 aa12.5□□□□□ -0.41
BRCA1-221ENST00000493795 CCER1Q8TC90 406 aaPredicted RBP12.4□□□□□ -0.42
BRCA1-221ENST00000493795 SUPT5HO00267 1087 aaKnown RBP12.31□□□□□ -0.44
BRCA1-221ENST00000493795 APLP2Q06481 763 aa12.24□□□□□ -0.45
BRCA1-221ENST00000493795 MYT1Q01538 1121 aa12.21□□□□□ -0.46
BRCA1-221ENST00000493795 EHMT2Q96KQ7 1210 aa12.18□□□□□ -0.46
BRCA1-221ENST00000493795 CENPBP07199 599 aaPredicted RBP12.14□□□□□ -0.47
BRCA1-221ENST00000493795 FAM9AQ8IZU1 332 aaPredicted RBP12.1□□□□□ -0.47
BRCA1-221ENST00000493795 NEFLP07196 543 aa11.99□□□□□ -0.49
BRCA1-221ENST00000493795 ZEB1P37275 1124 aaPredicted RBP11.86□□□□□ -0.51
BRCA1-221ENST00000493795 YTHDC1Q96MU7 727 aaKnown RBP11.85□□□□□ -0.51
BRCA1-221ENST00000493795 PCGF6Q9BYE7 350 aa11.85□□□□□ -0.51
BRCA1-221ENST00000493795 TTBK1Q5TCY1 1321 aaPredicted RBP11.84□□□□□ -0.51
BRCA1-221ENST00000493795 DAXXQ9UER7 740 aaPredicted RBP11.84□□□□□ -0.51
BRCA1-221ENST00000493795 SHROOM4Q9ULL8 1493 aa11.82□□□□□ -0.52
BRCA1-221ENST00000493795 ATP1B4Q9UN42 357 aaPredicted RBP11.65□□□□□ -0.55
BRCA1-221ENST00000493795 RANGAP1P46060 587 aaPredicted RBP11.62□□□□□ -0.55
BRCA1-221ENST00000493795 RTL5Q5HYW3 569 aaPredicted RBP11.54□□□□□ -0.56
BRCA1-221ENST00000493795 ZNF316A6NFI3 1004 aaPredicted RBP11.52□□□□□ -0.56
BRCA1-221ENST00000493795 UBTFP17480 764 aaKnown RBP11.41□□□□□ -0.58
BRCA1-221ENST00000493795 POLR3GLQ9BT43 218 aa11.41□□□□□ -0.58
BRCA1-221ENST00000493795 CLSPNQ9HAW4 1339 aa11.4□□□□□ -0.58
BRCA1-221ENST00000493795 TRIM41Q8WV44 630 aa11.39□□□□□ -0.59
BRCA1-221ENST00000493795 MYT1LQ9UL68 1186 aa11.33□□□□□ -0.6
BRCA1-221ENST00000493795 SLC4A1APQ9BWU0 796 aaKnown RBP11.25□□□□□ -0.61
BRCA1-221ENST00000493795 CNGB1Q14028 1251 aaPredicted RBP11.24□□□□□ -0.61
BRCA1-221ENST00000493795 ZBTB47Q9UFB7 747 aaPredicted RBP11.19□□□□□ -0.62
BRCA1-221ENST00000493795 HRCP23327 699 aa11.17□□□□□ -0.62
BRCA1-221ENST00000493795 TRIM26Q12899 539 aaPredicted RBP11.17□□□□□ -0.62
BRCA1-221ENST00000493795 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.16□□□□□ -0.62
BRCA1-221ENST00000493795 HNRNPUL2Q1KMD3 747 aaKnown RBP11.16□□□□□ -0.62
BRCA1-221ENST00000493795 ITGAEP38570 1179 aa11.16□□□□□ -0.62
BRCA1-221ENST00000493795 PPARGC1BQ86YN6 1023 aaKnown RBP11.15□□□□□ -0.62
BRCA1-221ENST00000493795 CHIC1Q5VXU3 224 aa11.11□□□□□ -0.63
BRCA1-221ENST00000493795 NISCHQ9Y2I1 1504 aa11.08□□□□□ -0.64
BRCA1-221ENST00000493795 CDK11AQ9UQ88 783 aaPredicted RBP11.08□□□□□ -0.64
BRCA1-221ENST00000493795 GLIPR1L2Q4G1C9 344 aa11.05□□□□□ -0.64
BRCA1-221ENST00000493795 ANP32BQ92688 251 aaKnown RBP11.02□□□□□ -0.64
BRCA1-221ENST00000493795 EIF5BO60841 1220 aaKnown RBP11.01□□□□□ -0.65
BRCA1-221ENST00000493795 BCANQ96GW7 911 aa11□□□□□ -0.65
BRCA1-221ENST00000493795 CANXP27824 592 aaKnown RBP10.99□□□□□ -0.65
BRCA1-221ENST00000493795 DIEXFQ68CQ4 756 aaKnown RBP10.99□□□□□ -0.65
BRCA1-221ENST00000493795 ANP32AP39687 249 aaKnown RBP10.96□□□□□ -0.66
BRCA1-221ENST00000493795 SLC24A1O60721 1099 aa10.94□□□□□ -0.66
BRCA1-221ENST00000493795 BCL11AQ9H165 835 aa10.94□□□□□ -0.66
BRCA1-221ENST00000493795 NEFMP07197 916 aa10.91□□□□□ -0.66
BRCA1-221ENST00000493795 ANP32CO43423 234 aa10.9□□□□□ -0.66
BRCA1-221ENST00000493795 TRIM52Q96A61 297 aa10.87□□□□□ -0.67
BRCA1-221ENST00000493795 GTF3C3Q9Y5Q9 886 aa10.86□□□□□ -0.67
BRCA1-221ENST00000493795 HSP90AA1P07900 732 aaKnown RBP10.85□□□□□ -0.67
BRCA1-221ENST00000493795 NPM2Q86SE8 214 aaKnown RBP10.84□□□□□ -0.67
BRCA1-221ENST00000493795 FAM50AQ14320 339 aaKnown RBP10.82□□□□□ -0.68
BRCA1-221ENST00000493795 NEUROD1Q13562 356 aa10.8□□□□□ -0.68
BRCA1-221ENST00000493795 CDK11BP21127 795 aaKnown RBP10.8□□□□□ -0.68
BRCA1-221ENST00000493795 ZNF326Q5BKZ1 582 aaKnown RBP10.79□□□□□ -0.68
BRCA1-221ENST00000493795 UPF2Q9HAU5 1272 aaKnown RBP10.78□□□□□ -0.68
BRCA1-221ENST00000493795 LOC105371045A0A1W2PR82 267 aa10.67□□□□□ -0.7
BRCA1-221ENST00000493795 TNNT2P45379 298 aaPredicted RBP10.67□□□□□ -0.7
BRCA1-221ENST00000493795 ARXQ96QS3 562 aa10.63□□□□□ -0.71
BRCA1-221ENST00000493795 ACIN1Q9UKV3 1341 aaKnown RBP10.61□□□□□ -0.71
BRCA1-221ENST00000493795 NBR1Q14596 966 aa10.6□□□□□ -0.71
BRCA1-221ENST00000493795 FKBP8Q14318 412 aa10.58□□□□□ -0.72
BRCA1-221ENST00000493795 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.58□□□□□ -0.72
BRCA1-221ENST00000493795 TRIM44Q96DX7 344 aaPredicted RBP10.57□□□□□ -0.72
BRCA1-221ENST00000493795 NCLP19338 710 aaKnown RBP10.57□□□□□ -0.72
BRCA1-221ENST00000493795 ANP32EQ9BTT0 268 aa10.53□□□□□ -0.72
BRCA1-221ENST00000493795 CCDC136Q96JN2 1154 aa10.51□□□□□ -0.73
BRCA1-221ENST00000493795 MYH16Q9H6N6 1097 aa10.51□□□□□ -0.73
BRCA1-221ENST00000493795 GOLGA6L22H0YM25 854 aa10.5□□□□□ -0.73
BRCA1-221ENST00000493795 ZRSR1Q15695 479 aaKnown RBP10.49□□□□□ -0.73
BRCA1-221ENST00000493795 PTMAP06454 111 aaKnown RBP10.49□□□□□ -0.73
BRCA1-221ENST00000493795 BECN1Q14457 450 aa10.48□□□□□ -0.73
BRCA1-221ENST00000493795 ESF1Q9H501 851 aaKnown RBP10.48□□□□□ -0.73
BRCA1-221ENST00000493795 HNRNPUQ00839 825 aaKnown RBP eCLIP10.47□□□□□ -0.73
BRCA1-221ENST00000493795 DDRGK1Q96HY6 314 aa10.47□□□□□ -0.73
BRCA1-221ENST00000493795 DNTTIP2Q5QJE6 756 aaKnown RBP10.46□□□□□ -0.73
BRCA1-221ENST00000493795 STAG3Q9UJ98 1225 aa10.45□□□□□ -0.74
BRCA1-221ENST00000493795 FAM9BQ8IZU0 186 aa10.44□□□□□ -0.74
BRCA1-221ENST00000493795 WDR43Q15061 677 aaKnown RBP eCLIP10.42□□□□□ -0.74
BRCA1-221ENST00000493795 SALL2Q9Y467 1007 aaPredicted RBP10.41□□□□□ -0.74
BRCA1-221ENST00000493795 ERICH6BQ5W0A0 696 aa10.4□□□□□ -0.74
BRCA1-221ENST00000493795 GOLGA6L6A8MZA4 724 aa10.4□□□□□ -0.74
BRCA1-221ENST00000493795 CHGAP10645 457 aaKnown RBP10.4□□□□□ -0.74
BRCA1-221ENST00000493795 NAP1L5Q96NT1 182 aaPredicted RBP10.4□□□□□ -0.74
BRCA1-221ENST00000493795 FBLN2P98095 1184 aa10.39□□□□□ -0.75
BRCA1-221ENST00000493795 TMC1Q8TDI8 760 aa10.38□□□□□ -0.75
BRCA1-221ENST00000493795 TULP1O00294 542 aaPredicted RBP10.38□□□□□ -0.75
BRCA1-221ENST00000493795 ZNF777Q9ULD5 760 aaPredicted RBP10.38□□□□□ -0.75
BRCA1-221ENST00000493795 TONSLQ96HA7 1378 aa10.38□□□□□ -0.75
BRCA1-221ENST00000493795 CASC1Q6TDU7 716 aa10.36□□□□□ -0.75
BRCA1-221ENST00000493795 A0A0G2JS52 829 aa10.34□□□□□ -0.75
BRCA1-221ENST00000493795 NRDCO43847 1150 aa10.34□□□□□ -0.75
BRCA1-221ENST00000493795 SCAF1Q9H7N4 1312 aaKnown RBP10.33□□□□□ -0.76
BRCA1-221ENST00000493795 ARID3CA6NKF2 412 aa10.31□□□□□ -0.76
BRCA1-221ENST00000493795 PPM1GO15355 546 aaPredicted RBP10.31□□□□□ -0.76
BRCA1-221ENST00000493795 DDX10Q13206 875 aaKnown RBP10.3□□□□□ -0.76
BRCA1-221ENST00000493795 TPRNQ4KMQ1 711 aa10.3□□□□□ -0.76
BRCA1-221ENST00000493795 CHAF1AQ13111 956 aaPredicted RBP10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms