RNA–Protein interactions for RNA: ENST00000429713.6

SYNPO2-202, Transcript of synaptopodin 2, humanhuman

TSL 1 (best) BASIC

Gene SYNPO2, Length 9,920 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO2-202ENST00000429713 MYT1Q01538 1121 aa13.37□□□□□ -0.27
SYNPO2-202ENST00000429713 PELP1Q8IZL8 1130 aaKnown RBP13.21□□□□□ -0.29
SYNPO2-202ENST00000429713 TTBK1Q5TCY1 1321 aaPredicted RBP12.65□□□□□ -0.38
SYNPO2-202ENST00000429713 NISCHQ9Y2I1 1504 aa12.62□□□□□ -0.39
SYNPO2-202ENST00000429713 DCAF8L2P0C7V8 631 aa11.99□□□□□ -0.49
SYNPO2-202ENST00000429713 ZEB1P37275 1124 aaPredicted RBP11.94□□□□□ -0.5
SYNPO2-202ENST00000429713 SUPT5HO00267 1087 aaKnown RBP11.88□□□□□ -0.51
SYNPO2-202ENST00000429713 CENPBP07199 599 aaPredicted RBP11.81□□□□□ -0.52
SYNPO2-202ENST00000429713 ERICH6Q7L0X2 663 aa11.8□□□□□ -0.52
SYNPO2-202ENST00000429713 SHROOM4Q9ULL8 1493 aa11.8□□□□□ -0.52
SYNPO2-202ENST00000429713 CCER1Q8TC90 406 aaPredicted RBP11.63□□□□□ -0.55
SYNPO2-202ENST00000429713 YTHDC1Q96MU7 727 aaKnown RBP11.56□□□□□ -0.56
SYNPO2-202ENST00000429713 CLSPNQ9HAW4 1339 aa11.54□□□□□ -0.56
SYNPO2-202ENST00000429713 PCGF6Q9BYE7 350 aa11.5□□□□□ -0.57
SYNPO2-202ENST00000429713 HRCP23327 699 aa11.48□□□□□ -0.57
SYNPO2-202ENST00000429713 MYT1LQ9UL68 1186 aa11.45□□□□□ -0.58
SYNPO2-202ENST00000429713 EHMT2Q96KQ7 1210 aa11.33□□□□□ -0.6
SYNPO2-202ENST00000429713 FAM9AQ8IZU1 332 aaPredicted RBP11.12□□□□□ -0.63
SYNPO2-202ENST00000429713 NEFLP07196 543 aa11.07□□□□□ -0.64
SYNPO2-202ENST00000429713 APLP2Q06481 763 aa11.07□□□□□ -0.64
SYNPO2-202ENST00000429713 TRIM26Q12899 539 aaPredicted RBP11.07□□□□□ -0.64
SYNPO2-202ENST00000429713 TRIM41Q8WV44 630 aa11.05□□□□□ -0.64
SYNPO2-202ENST00000429713 GLIPR1L2Q4G1C9 344 aa11.04□□□□□ -0.64
SYNPO2-202ENST00000429713 CCDC180Q9P1Z9 1646 aa11□□□□□ -0.65
SYNPO2-202ENST00000429713 DCAF1Q9Y4B6 1507 aa11□□□□□ -0.65
SYNPO2-202ENST00000429713 PPARGC1BQ86YN6 1023 aaKnown RBP10.9□□□□□ -0.66
SYNPO2-202ENST00000429713 CHIC1Q5VXU3 224 aa10.87□□□□□ -0.67
SYNPO2-202ENST00000429713 LOC105371045A0A1W2PR82 267 aa10.86□□□□□ -0.67
SYNPO2-202ENST00000429713 RTL5Q5HYW3 569 aaPredicted RBP10.85□□□□□ -0.67
SYNPO2-202ENST00000429713 ACIN1Q9UKV3 1341 aaKnown RBP10.84□□□□□ -0.67
SYNPO2-202ENST00000429713 UBTFP17480 764 aaKnown RBP10.79□□□□□ -0.68
SYNPO2-202ENST00000429713 RANGAP1P46060 587 aaPredicted RBP10.74□□□□□ -0.69
SYNPO2-202ENST00000429713 ERICH6BQ5W0A0 696 aa10.72□□□□□ -0.69
SYNPO2-202ENST00000429713 DIEXFQ68CQ4 756 aaKnown RBP10.7□□□□□ -0.7
SYNPO2-202ENST00000429713 ABCC9O60706 1549 aa10.69□□□□□ -0.7
SYNPO2-202ENST00000429713 GTF3C3Q9Y5Q9 886 aa10.63□□□□□ -0.71
SYNPO2-202ENST00000429713 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.63□□□□□ -0.71
SYNPO2-202ENST00000429713 ANP32EQ9BTT0 268 aa10.62□□□□□ -0.71
SYNPO2-202ENST00000429713 SLC24A1O60721 1099 aa10.61□□□□□ -0.71
SYNPO2-202ENST00000429713 DAXXQ9UER7 740 aaPredicted RBP10.6□□□□□ -0.71
SYNPO2-202ENST00000429713 ATP1B4Q9UN42 357 aaPredicted RBP10.57□□□□□ -0.72
SYNPO2-202ENST00000429713 BCL11AQ9H165 835 aa10.56□□□□□ -0.72
SYNPO2-202ENST00000429713 ZCCHC6Q5VYS8 1495 aaKnown RBP10.55□□□□□ -0.72
SYNPO2-202ENST00000429713 NCLP19338 710 aaKnown RBP10.54□□□□□ -0.72
SYNPO2-202ENST00000429713 MYO15BQ96JP2 1530 aa10.51□□□□□ -0.73
SYNPO2-202ENST00000429713 SCRIBQ14160 1630 aa10.5□□□□□ -0.73
SYNPO2-202ENST00000429713 SCAF1Q9H7N4 1312 aaKnown RBP10.5□□□□□ -0.73
SYNPO2-202ENST00000429713 HNRNPUL2Q1KMD3 747 aaKnown RBP10.5□□□□□ -0.73
SYNPO2-202ENST00000429713 CDK11AQ9UQ88 783 aaPredicted RBP10.48□□□□□ -0.73
SYNPO2-202ENST00000429713 ARID4BQ4LE39 1312 aaPredicted RBP10.47□□□□□ -0.73
SYNPO2-202ENST00000429713 ZNF316A6NFI3 1004 aaPredicted RBP10.44□□□□□ -0.74
SYNPO2-202ENST00000429713 ANP32AP39687 249 aaKnown RBP10.43□□□□□ -0.74
SYNPO2-202ENST00000429713 ITGAEP38570 1179 aa10.42□□□□□ -0.74
SYNPO2-202ENST00000429713 EIF5BO60841 1220 aaKnown RBP10.37□□□□□ -0.75
SYNPO2-202ENST00000429713 ZNF326Q5BKZ1 582 aaKnown RBP10.35□□□□□ -0.75
SYNPO2-202ENST00000429713 RB1CC1Q8TDY2 1594 aa10.33□□□□□ -0.76
SYNPO2-202ENST00000429713 TNNT2P45379 298 aaPredicted RBP10.31□□□□□ -0.76
SYNPO2-202ENST00000429713 TRIM44Q96DX7 344 aaPredicted RBP10.28□□□□□ -0.76
SYNPO2-202ENST00000429713 PABPN1Q86U42 306 aaKnown RBP eCLIP10.27□□□□□ -0.77
SYNPO2-202ENST00000429713 NEUROD1Q13562 356 aa10.25□□□□□ -0.77
SYNPO2-202ENST00000429713 BCANQ96GW7 911 aa10.24□□□□□ -0.77
SYNPO2-202ENST00000429713 USP35Q9P2H5 1018 aa10.23□□□□□ -0.77
SYNPO2-202ENST00000429713 ANP32BQ92688 251 aaKnown RBP10.23□□□□□ -0.77
SYNPO2-202ENST00000429713 RSPH6AQ9H0K4 717 aa10.23□□□□□ -0.77
SYNPO2-202ENST00000429713 ANP32CO43423 234 aa10.22□□□□□ -0.77
SYNPO2-202ENST00000429713 POLR3GLQ9BT43 218 aa10.21□□□□□ -0.77
SYNPO2-202ENST00000429713 NACADO15069 1562 aa10.21□□□□□ -0.77
SYNPO2-202ENST00000429713 FAM50AQ14320 339 aaKnown RBP10.21□□□□□ -0.78
SYNPO2-202ENST00000429713 PPM1GO15355 546 aaPredicted RBP10.2□□□□□ -0.78
SYNPO2-202ENST00000429713 DDRGK1Q96HY6 314 aa10.16□□□□□ -0.78
SYNPO2-202ENST00000429713 PRKCSHP14314 528 aaPredicted RBP10.16□□□□□ -0.78
SYNPO2-202ENST00000429713 CNGB1Q14028 1251 aaPredicted RBP10.15□□□□□ -0.78
SYNPO2-202ENST00000429713 PTMSP20962 102 aa10.12□□□□□ -0.79
SYNPO2-202ENST00000429713 EEA1Q15075 1411 aa10.11□□□□□ -0.79
SYNPO2-202ENST00000429713 ZBTB47Q9UFB7 747 aaPredicted RBP10.09□□□□□ -0.79
SYNPO2-202ENST00000429713 CSRNP3Q8WYN3 585 aa10.09□□□□□ -0.79
SYNPO2-202ENST00000429713 FANCIQ9NVI1 1328 aa10.09□□□□□ -0.79
SYNPO2-202ENST00000429713 FKBP8Q14318 412 aa10.08□□□□□ -0.8
SYNPO2-202ENST00000429713 MIER1Q8N108 512 aa10.06□□□□□ -0.8
SYNPO2-202ENST00000429713 LAS1LQ9Y4W2 734 aaKnown RBP10.05□□□□□ -0.8
SYNPO2-202ENST00000429713 L1TD1Q5T7N2 865 aaKnown RBP10.04□□□□□ -0.8
SYNPO2-202ENST00000429713 NEFMP07197 916 aa10.04□□□□□ -0.8
SYNPO2-202ENST00000429713 TRIM52Q96A61 297 aa10.03□□□□□ -0.8
SYNPO2-202ENST00000429713 MTERF4Q7Z6M4 381 aaKnown RBP10.03□□□□□ -0.8
SYNPO2-202ENST00000429713 CEP162Q5TB80 1403 aa10.03□□□□□ -0.8
SYNPO2-202ENST00000429713 RSF1Q96T23 1441 aaPredicted RBP10.02□□□□□ -0.81
SYNPO2-202ENST00000429713 NOP58Q9Y2X3 529 aaKnown RBP10.02□□□□□ -0.81
SYNPO2-202ENST00000429713 WIZO95785 1651 aa10.01□□□□□ -0.81
SYNPO2-202ENST00000429713 GOLGA3Q08378 1498 aa10□□□□□ -0.81
SYNPO2-202ENST00000429713 UPF2Q9HAU5 1272 aaKnown RBP9.99□□□□□ -0.81
SYNPO2-202ENST00000429713 UBE2Q2Q8WVN8 375 aa9.99□□□□□ -0.81
SYNPO2-202ENST00000429713 MAP7D2Q96T17 732 aa9.99□□□□□ -0.81
SYNPO2-202ENST00000429713 CDK11BP21127 795 aaKnown RBP9.98□□□□□ -0.81
SYNPO2-202ENST00000429713 BECN1Q14457 450 aa9.97□□□□□ -0.81
SYNPO2-202ENST00000429713 DEKP35659 375 aaKnown RBP9.96□□□□□ -0.81
SYNPO2-202ENST00000429713 TIMELESSQ9UNS1 1208 aa9.96□□□□□ -0.81
SYNPO2-202ENST00000429713 DDX10Q13206 875 aaKnown RBP9.96□□□□□ -0.81
SYNPO2-202ENST00000429713 TONSLQ96HA7 1378 aa9.96□□□□□ -0.81
SYNPO2-202ENST00000429713 CLIP1P30622 1438 aa9.96□□□□□ -0.82
SYNPO2-202ENST00000429713 SUPT16HQ9Y5B9 1047 aaKnown RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms