Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC6.09□□□□□ -1.43
COL6A3P12111 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC6.09□□□□□ -1.43
COL6A3P12111 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC6.09□□□□□ -1.43
COL6A3P12111 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC6.09□□□□□ -1.43
COL6A3P12111 GLRXP3-201ENST00000470810 321 ntBASIC6.09□□□□□ -1.43
COL6A3P12111 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC6.09□□□□□ -1.43
COL6A3P12111 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC6.09□□□□□ -1.43
COL6A3P12111 AC091905.4-201ENST00000623432 202 ntBASIC6.09□□□□□ -1.43
COL6A3P12111 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC6.09□□□□□ -1.43
COL6A3P12111 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
COL6A3P12111 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC6.09□□□□□ -1.43
COL6A3P12111 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC6.09□□□□□ -1.43
COL6A3P12111 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 DMBT1-202ENST00000338354 7686 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 DMBT1-204ENST00000368909 7686 ntAPPRIS P4 TSL 5 BASIC6.09□□□□□ -1.43
COL6A3P12111 DMBT1-207ENST00000619379 7686 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
COL6A3P12111 ALDH2-201ENST00000261733 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.09□□□□□ -1.43
COL6A3P12111 MIR208A-201ENST00000362287 71 ntBASIC6.09□□□□□ -1.43
COL6A3P12111 SNORA17.1-201ENST00000362945 126 ntBASIC6.09□□□□□ -1.43
COL6A3P12111 RN7SKP28-201ENST00000364770 305 ntBASIC6.09□□□□□ -1.43
COL6A3P12111 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC6.09□□□□□ -1.43
COL6A3P12111 AC245014.1-201ENST00000427732 381 ntTSL 5 BASIC6.09□□□□□ -1.43
COL6A3P12111 HMGB3P24-201ENST00000433260 622 ntBASIC6.09□□□□□ -1.43
COL6A3P12111 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 AC090058.1-201ENST00000498788 435 ntBASIC6.09□□□□□ -1.43
COL6A3P12111 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC6.09□□□□□ -1.43
COL6A3P12111 AC009962.1-201ENST00000567327 3813 ntBASIC6.09□□□□□ -1.43
COL6A3P12111 AC233699.1-201ENST00000569955 1168 ntBASIC6.09□□□□□ -1.43
COL6A3P12111 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC6.09□□□□□ -1.43
COL6A3P12111 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 SLC25A25-AS1-201ENST00000418747 6391 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.44
COL6A3P12111 LINC00261-202ENST00000564492 4912 ntTSL 3 BASIC6.09□□□□□ -1.44
COL6A3P12111 LAMA4-207ENST00000424408 5983 ntAPPRIS P3 TSL 5 BASIC6.09□□□□□ -1.44
COL6A3P12111 AGPAT4-201ENST00000320285 7865 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
COL6A3P12111 PCDHA4-204ENST00000618834 10557 ntBASIC6.09□□□□□ -1.44
COL6A3P12111 PKP4-201ENST00000389757 5777 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.44
COL6A3P12111 EYA4-206ENST00000431403 2154 ntTSL 5 BASIC6.09□□□□□ -1.44
COL6A3P12111 AC025809.2-201ENST00000625085 1802 ntBASIC6.09□□□□□ -1.44
COL6A3P12111 ZNF623-202ENST00000501748 6759 ntAPPRIS P3 BASIC6.09□□□□□ -1.44
COL6A3P12111 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.09□□□□□ -1.44
COL6A3P12111 SATB1-204ENST00000417717 4589 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
COL6A3P12111 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
COL6A3P12111 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.08□□□□□ -1.44
COL6A3P12111 FAM19A2-211ENST00000550003 2499 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 TNKS-201ENST00000310430 9620 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 COX6B1P1-201ENST00000415962 213 ntBASIC6.08□□□□□ -1.44
COL6A3P12111 RPL23AP18-201ENST00000416139 468 ntBASIC6.08□□□□□ -1.44
COL6A3P12111 NMD3P2-201ENST00000421815 761 ntBASIC6.08□□□□□ -1.44
COL6A3P12111 PRUNEP1-201ENST00000425846 705 ntBASIC6.08□□□□□ -1.44
COL6A3P12111 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC6.08□□□□□ -1.44
COL6A3P12111 NXPE3-205ENST00000491511 8074 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
COL6A3P12111 AC015864.1-201ENST00000496512 544 ntBASIC6.08□□□□□ -1.44
COL6A3P12111 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC6.08□□□□□ -1.44
COL6A3P12111 MIR4270-201ENST00000581799 70 ntBASIC6.08□□□□□ -1.44
COL6A3P12111 SKA2-207ENST00000583380 583 ntTSL 5 BASIC6.08□□□□□ -1.44
COL6A3P12111 OPCML-207ENST00000541867 6277 ntTSL 5 BASIC6.08□□□□□ -1.44
COL6A3P12111 OPCML-208ENST00000612177 6250 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
COL6A3P12111 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.08□□□□□ -1.44
COL6A3P12111 KLHL3-207ENST00000506491 6566 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
COL6A3P12111 ZNFX1-204ENST00000396105 7371 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 SLFN11-202ENST00000394566 5030 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
COL6A3P12111 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC6.08□□□□□ -1.44
COL6A3P12111 AC234779.1-201ENST00000425910 285 ntBASIC6.08□□□□□ -1.44
COL6A3P12111 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.08□□□□□ -1.44
COL6A3P12111 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC6.08□□□□□ -1.44
COL6A3P12111 NMNAT1P5-201ENST00000559657 841 ntBASIC6.08□□□□□ -1.44
COL6A3P12111 RBM22P12-201ENST00000567098 1255 ntBASIC6.08□□□□□ -1.44
COL6A3P12111 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC6.08□□□□□ -1.44
COL6A3P12111 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 VPS13A-205ENST00000376636 11145 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 LAMA3-201ENST00000269217 5671 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 LINC01226-208ENST00000640623 5019 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC6.08□□□□□ -1.44
COL6A3P12111 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
COL6A3P12111 BEND3-201ENST00000369042 6200 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
COL6A3P12111 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC6.08□□□□□ -1.44
COL6A3P12111 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC6.08□□□□□ -1.44
COL6A3P12111 Z98755.1-201ENST00000407015 1384 ntBASIC6.08□□□□□ -1.44
COL6A3P12111 STK24-208ENST00000539966 9361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 HPS5-201ENST00000349215 4491 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
COL6A3P12111 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC6.08□□□□□ -1.44
COL6A3P12111 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC6.08□□□□□ -1.44
COL6A3P12111 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms