RNA–Protein interactions for RNA: ENST00000269217.10

LAMA3-201, Transcript of laminin subunit alpha 3, humanhuman

TSL 1 (best) BASIC

Gene LAMA3, Length 5,671 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAMA3-201ENST00000269217 DCAF8L2P0C7V8 631 aa17.48■□□□□ 0.39
LAMA3-201ENST00000269217 NISCHQ9Y2I1 1504 aa16.94■□□□□ 0.3
LAMA3-201ENST00000269217 SUPT5HO00267 1087 aaKnown RBP16.78■□□□□ 0.28
LAMA3-201ENST00000269217 SHROOM4Q9ULL8 1493 aa16.46■□□□□ 0.23
LAMA3-201ENST00000269217 EHMT2Q96KQ7 1210 aa16.14■□□□□ 0.17
LAMA3-201ENST00000269217 PELP1Q8IZL8 1130 aaKnown RBP16.11■□□□□ 0.17
LAMA3-201ENST00000269217 APLP2Q06481 763 aa15.99■□□□□ 0.15
LAMA3-201ENST00000269217 FAM9AQ8IZU1 332 aaPredicted RBP15.81■□□□□ 0.12
LAMA3-201ENST00000269217 PCGF6Q9BYE7 350 aa15.8■□□□□ 0.12
LAMA3-201ENST00000269217 ZEB1P37275 1124 aaPredicted RBP15.67■□□□□ 0.1
LAMA3-201ENST00000269217 TTBK1Q5TCY1 1321 aaPredicted RBP15.64■□□□□ 0.09
LAMA3-201ENST00000269217 CENPBP07199 599 aaPredicted RBP15.6■□□□□ 0.09
LAMA3-201ENST00000269217 TRIM41Q8WV44 630 aa15.59■□□□□ 0.09
LAMA3-201ENST00000269217 CCER1Q8TC90 406 aaPredicted RBP15.52■□□□□ 0.08
LAMA3-201ENST00000269217 RANGAP1P46060 587 aaPredicted RBP15.43■□□□□ 0.06
LAMA3-201ENST00000269217 ERICH6Q7L0X2 663 aa15.38■□□□□ 0.05
LAMA3-201ENST00000269217 UBTFP17480 764 aaKnown RBP15.37■□□□□ 0.05
LAMA3-201ENST00000269217 ATP1B4Q9UN42 357 aaPredicted RBP15.31■□□□□ 0.04
LAMA3-201ENST00000269217 NEFLP07196 543 aa15.22■□□□□ 0.03
LAMA3-201ENST00000269217 TRIM26Q12899 539 aaPredicted RBP15.2■□□□□ 0.02
LAMA3-201ENST00000269217 YTHDC1Q96MU7 727 aaKnown RBP15.16■□□□□ 0.02
LAMA3-201ENST00000269217 MYT1Q01538 1121 aa15.13■□□□□ 0.01
LAMA3-201ENST00000269217 PPARGC1BQ86YN6 1023 aaKnown RBP15.09■□□□□ 0.01
LAMA3-201ENST00000269217 HRCP23327 699 aa15.09■□□□□ 0.01
LAMA3-201ENST00000269217 CHIC1Q5VXU3 224 aa14.98□□□□□ -0.01
LAMA3-201ENST00000269217 LOC105371045A0A1W2PR82 267 aa14.92□□□□□ -0.02
LAMA3-201ENST00000269217 ITGAEP38570 1179 aa14.86□□□□□ -0.03
LAMA3-201ENST00000269217 HNRNPUL2Q1KMD3 747 aaKnown RBP14.82□□□□□ -0.04
LAMA3-201ENST00000269217 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.75□□□□□ -0.05
LAMA3-201ENST00000269217 POLR3GLQ9BT43 218 aa14.73□□□□□ -0.05
LAMA3-201ENST00000269217 DAXXQ9UER7 740 aaPredicted RBP14.73□□□□□ -0.05
LAMA3-201ENST00000269217 DIEXFQ68CQ4 756 aaKnown RBP14.66□□□□□ -0.06
LAMA3-201ENST00000269217 MYT1LQ9UL68 1186 aa14.66□□□□□ -0.06
LAMA3-201ENST00000269217 CNGB1Q14028 1251 aaPredicted RBP14.55□□□□□ -0.08
LAMA3-201ENST00000269217 FAM50AQ14320 339 aaKnown RBP14.51□□□□□ -0.09
LAMA3-201ENST00000269217 RTL5Q5HYW3 569 aaPredicted RBP14.44□□□□□ -0.1
LAMA3-201ENST00000269217 TRIM52Q96A61 297 aa14.42□□□□□ -0.1
LAMA3-201ENST00000269217 SLC4A1APQ9BWU0 796 aaKnown RBP14.41□□□□□ -0.1
LAMA3-201ENST00000269217 ABCC9O60706 1549 aa14.41□□□□□ -0.1
LAMA3-201ENST00000269217 NEUROD1Q13562 356 aa14.4□□□□□ -0.1
LAMA3-201ENST00000269217 ZNF316A6NFI3 1004 aaPredicted RBP14.4□□□□□ -0.1
LAMA3-201ENST00000269217 CLSPNQ9HAW4 1339 aa14.39□□□□□ -0.11
LAMA3-201ENST00000269217 PABPN1Q86U42 306 aaKnown RBP eCLIP14.37□□□□□ -0.11
LAMA3-201ENST00000269217 GTF3C3Q9Y5Q9 886 aa14.37□□□□□ -0.11
LAMA3-201ENST00000269217 ANP32CO43423 234 aa14.36□□□□□ -0.11
LAMA3-201ENST00000269217 BCANQ96GW7 911 aa14.28□□□□□ -0.12
LAMA3-201ENST00000269217 CDK11AQ9UQ88 783 aaPredicted RBP14.26□□□□□ -0.13
LAMA3-201ENST00000269217 CSRNP3Q8WYN3 585 aa14.24□□□□□ -0.13
LAMA3-201ENST00000269217 ZNF326Q5BKZ1 582 aaKnown RBP14.23□□□□□ -0.13
LAMA3-201ENST00000269217 ACIN1Q9UKV3 1341 aaKnown RBP14.2□□□□□ -0.14
LAMA3-201ENST00000269217 DCAF1Q9Y4B6 1507 aa14.12□□□□□ -0.15
LAMA3-201ENST00000269217 ZBTB47Q9UFB7 747 aaPredicted RBP14.11□□□□□ -0.15
LAMA3-201ENST00000269217 P3H3Q8IVL6 736 aa14.1□□□□□ -0.15
LAMA3-201ENST00000269217 FBLN2P98095 1184 aa14.09□□□□□ -0.15
LAMA3-201ENST00000269217 CANXP27824 592 aaKnown RBP14.07□□□□□ -0.16
LAMA3-201ENST00000269217 ZCCHC6Q5VYS8 1495 aaKnown RBP14.04□□□□□ -0.16
LAMA3-201ENST00000269217 ANP32AP39687 249 aaKnown RBP14.02□□□□□ -0.16
LAMA3-201ENST00000269217 NEFMP07197 916 aa14.01□□□□□ -0.17
LAMA3-201ENST00000269217 TONSLQ96HA7 1378 aa14□□□□□ -0.17
LAMA3-201ENST00000269217 SCRIBQ14160 1630 aa14□□□□□ -0.17
LAMA3-201ENST00000269217 ARID3CA6NKF2 412 aa13.99□□□□□ -0.17
LAMA3-201ENST00000269217 ZNF777Q9ULD5 760 aaPredicted RBP13.97□□□□□ -0.17
LAMA3-201ENST00000269217 FKBP8Q14318 412 aa13.94□□□□□ -0.18
LAMA3-201ENST00000269217 HNRNPUQ00839 825 aaKnown RBP eCLIP13.9□□□□□ -0.18
LAMA3-201ENST00000269217 DDX10Q13206 875 aaKnown RBP13.89□□□□□ -0.19
LAMA3-201ENST00000269217 NPM2Q86SE8 214 aaKnown RBP13.88□□□□□ -0.19
LAMA3-201ENST00000269217 SLC24A1O60721 1099 aa13.88□□□□□ -0.19
LAMA3-201ENST00000269217 BCL11AQ9H165 835 aa13.87□□□□□ -0.19
LAMA3-201ENST00000269217 FAM9BQ8IZU0 186 aa13.83□□□□□ -0.2
LAMA3-201ENST00000269217 CCDC180Q9P1Z9 1646 aa13.82□□□□□ -0.2
LAMA3-201ENST00000269217 UPF2Q9HAU5 1272 aaKnown RBP13.78□□□□□ -0.2
LAMA3-201ENST00000269217 CLIP1P30622 1438 aa13.77□□□□□ -0.21
LAMA3-201ENST00000269217 TMC1Q8TDI8 760 aa13.77□□□□□ -0.21
LAMA3-201ENST00000269217 CHIC2Q9UKJ5 165 aa13.76□□□□□ -0.21
LAMA3-201ENST00000269217 CCDC136Q96JN2 1154 aa13.75□□□□□ -0.21
LAMA3-201ENST00000269217 ANP32BQ92688 251 aaKnown RBP13.75□□□□□ -0.21
LAMA3-201ENST00000269217 CHGAP10645 457 aaKnown RBP13.75□□□□□ -0.21
LAMA3-201ENST00000269217 MTUS2Q5JR59 1369 aa13.74□□□□□ -0.21
LAMA3-201ENST00000269217 HSP90AA1P07900 732 aaKnown RBP13.74□□□□□ -0.21
LAMA3-201ENST00000269217 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.73□□□□□ -0.21
LAMA3-201ENST00000269217 EEA1Q15075 1411 aa13.73□□□□□ -0.21
LAMA3-201ENST00000269217 MRS2Q9HD23 443 aa13.73□□□□□ -0.21
LAMA3-201ENST00000269217 MIER1Q8N108 512 aa13.72□□□□□ -0.21
LAMA3-201ENST00000269217 ESF1Q9H501 851 aaKnown RBP13.72□□□□□ -0.21
LAMA3-201ENST00000269217 SALL2Q9Y467 1007 aaPredicted RBP13.71□□□□□ -0.22
LAMA3-201ENST00000269217 STAG3Q9UJ98 1225 aa13.7□□□□□ -0.22
LAMA3-201ENST00000269217 SCAF1Q9H7N4 1312 aaKnown RBP13.69□□□□□ -0.22
LAMA3-201ENST00000269217 TSPY4P0CV99 314 aa13.69□□□□□ -0.22
LAMA3-201ENST00000269217 TSPY10P0CW01 314 aa13.69□□□□□ -0.22
LAMA3-201ENST00000269217 GOLGA3Q08378 1498 aa13.69□□□□□ -0.22
LAMA3-201ENST00000269217 WDR43Q15061 677 aaKnown RBP eCLIP13.69□□□□□ -0.22
LAMA3-201ENST00000269217 MYO15BQ96JP2 1530 aa13.67□□□□□ -0.22
LAMA3-201ENST00000269217 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.67□□□□□ -0.22
LAMA3-201ENST00000269217 CEP162Q5TB80 1403 aa13.66□□□□□ -0.22
LAMA3-201ENST00000269217 EIF4G2P78344 907 aaKnown RBP eCLIP13.66□□□□□ -0.22
LAMA3-201ENST00000269217 NPM1P06748 294 aaKnown RBP eCLIP13.66□□□□□ -0.22
LAMA3-201ENST00000269217 KDM2AQ9Y2K7 1162 aa13.64□□□□□ -0.23
LAMA3-201ENST00000269217 RSF1Q96T23 1441 aaPredicted RBP13.63□□□□□ -0.23
LAMA3-201ENST00000269217 EIF5BO60841 1220 aaKnown RBP13.62□□□□□ -0.23
LAMA3-201ENST00000269217 NBR1Q14596 966 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms