Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 MTERF4-222ENST00000614476 4524 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PRKDCP78527 RPL23P2-201ENST00000320371 421 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 RNA5SP305-201ENST00000362665 119 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 AL353625.1-202ENST00000366273 571 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 TPT1-204ENST00000379060 764 ntTSL 5 BASIC4.23□□□□□ -1.73
PRKDCP78527 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC4.23□□□□□ -1.73
PRKDCP78527 AL390774.1-201ENST00000411924 246 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 AL133173.1-201ENST00000423458 397 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC4.23□□□□□ -1.73
PRKDCP78527 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
PRKDCP78527 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC4.23□□□□□ -1.73
PRKDCP78527 AC087283.1-201ENST00000604029 1074 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 OR52H1-202ENST00000641796 1061 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 FBXO48-201ENST00000377957 5666 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PRKDCP78527 ADAMTS9-210ENST00000498707 7624 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PRKDCP78527 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
PRKDCP78527 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC4.23□□□□□ -1.73
PRKDCP78527 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
PRKDCP78527 GLULP6-201ENST00000399502 913 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 AC245028.1-201ENST00000423259 256 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 AC239367.2-201ENST00000447309 705 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 AC016027.4-201ENST00000450866 277 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC4.23□□□□□ -1.73
PRKDCP78527 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC4.23□□□□□ -1.73
PRKDCP78527 AC034205.1-201ENST00000520621 638 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 CYCSP29-201ENST00000533731 318 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.23□□□□□ -1.73
PRKDCP78527 CYP4F35P-202ENST00000636121 390 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 ZNF471-202ENST00000591537 5859 ntTSL 2 BASIC4.23□□□□□ -1.73
PRKDCP78527 SLC38A2-201ENST00000256689 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PRKDCP78527 NBPF15-203ENST00000577412 4707 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
PRKDCP78527 CCSER1-209ENST00000509176 5847 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PRKDCP78527 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC4.23□□□□□ -1.73
PRKDCP78527 TARS-201ENST00000265112 4314 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PRKDCP78527 BHLHB9-202ENST00000372735 5130 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
PRKDCP78527 CD28-201ENST00000324106 4812 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PRKDCP78527 INTS3-201ENST00000318967 5235 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PRKDCP78527 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC4.23□□□□□ -1.73
PRKDCP78527 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
PRKDCP78527 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
PRKDCP78527 OPCML-207ENST00000541867 6277 ntTSL 5 BASIC4.23□□□□□ -1.73
PRKDCP78527 OPCML-208ENST00000612177 6250 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
PRKDCP78527 DCAF1-203ENST00000504652 5951 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
PRKDCP78527 KIAA1671-203ENST00000406486 7864 ntAPPRIS P2 TSL 5 BASIC4.23□□□□□ -1.73
PRKDCP78527 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
PRKDCP78527 AC004975.1-201ENST00000428733 208 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 OARD1-211ENST00000480585 829 ntTSL 3 BASIC4.23□□□□□ -1.73
PRKDCP78527 RN7SL561P-201ENST00000488553 281 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 AL513548.2-201ENST00000602994 1207 ntBASIC4.23□□□□□ -1.73
PRKDCP78527 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC4.23□□□□□ -1.73
PRKDCP78527 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PRKDCP78527 MCM3AP-202ENST00000397708 6333 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
PRKDCP78527 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
PRKDCP78527 NYAP2-201ENST00000272907 4590 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 GTF2IP4-201ENST00000453092 2054 ntBASIC4.22□□□□□ -1.73
PRKDCP78527 UGT2B25P-201ENST00000511504 1586 ntBASIC4.22□□□□□ -1.73
PRKDCP78527 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 ARHGAP32-206ENST00000527272 5289 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 RASSF6-201ENST00000307439 5994 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 AC009120.2-204ENST00000621548 2032 ntBASIC4.22□□□□□ -1.73
PRKDCP78527 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.22□□□□□ -1.73
PRKDCP78527 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC4.22□□□□□ -1.73
PRKDCP78527 AC004690.1-201ENST00000418216 328 ntBASIC4.22□□□□□ -1.73
PRKDCP78527 AC093162.1-201ENST00000419682 124 ntBASIC4.22□□□□□ -1.73
PRKDCP78527 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.22□□□□□ -1.73
PRKDCP78527 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.22□□□□□ -1.73
PRKDCP78527 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.22□□□□□ -1.73
PRKDCP78527 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.22□□□□□ -1.73
PRKDCP78527 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC4.22□□□□□ -1.73
PRKDCP78527 PALM2-AKAP2-201ENST00000302798 4718 ntTSL 2 BASIC4.22□□□□□ -1.73
PRKDCP78527 BSN-201ENST00000296452 15955 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 HSPA8P18-201ENST00000439846 1928 ntBASIC4.22□□□□□ -1.73
PRKDCP78527 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 SLC25A3-203ENST00000401722 6087 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC4.22□□□□□ -1.73
PRKDCP78527 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
PRKDCP78527 PKP4-201ENST00000389757 5777 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC4.22□□□□□ -1.73
PRKDCP78527 TRPM3-210ENST00000377111 4618 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 NLRC5-201ENST00000262510 6822 ntAPPRIS P3 TSL 5 BASIC4.22□□□□□ -1.73
PRKDCP78527 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
PRKDCP78527 CD46-209ENST00000367047 3089 ntTSL 5 BASIC4.22□□□□□ -1.73
PRKDCP78527 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC4.22□□□□□ -1.73
PRKDCP78527 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
PRKDCP78527 RNU4-4P-201ENST00000364588 130 ntBASIC4.22□□□□□ -1.73
PRKDCP78527 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC4.22□□□□□ -1.73
PRKDCP78527 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC4.22□□□□□ -1.73
PRKDCP78527 AC025674.1-201ENST00000507074 324 ntBASIC4.22□□□□□ -1.73
PRKDCP78527 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC4.22□□□□□ -1.73
PRKDCP78527 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC4.22□□□□□ -1.73
PRKDCP78527 AC009163.6-201ENST00000612367 342 ntBASIC4.22□□□□□ -1.73
PRKDCP78527 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.22□□□□□ -1.73
PRKDCP78527 RPRD2-202ENST00000369068 4612 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms