RNA–Protein interactions for RNA: ENST00000364588.1

RNU4-4P-201, Transcript of RNA, U4 small nuclear 4, pseudogene, humanhuman

BASIC

Gene RNU4-4P, Length 130 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-4P-201ENST00000364588 AEBP2Q6ZN18 517 aaPredicted RBP24.67■■□□□ 1.54
RNU4-4P-201ENST00000364588 CHIC1Q5VXU3 224 aa24.03■■□□□ 1.44
RNU4-4P-201ENST00000364588 SENP3Q9H4L4 574 aaPredicted RBP21.11■□□□□ 0.97
RNU4-4P-201ENST00000364588 PHF23Q9BUL5 403 aaPredicted RBP21.02■□□□□ 0.96
RNU4-4P-201ENST00000364588 FOXD1Q16676 465 aa19.5■□□□□ 0.71
RNU4-4P-201ENST00000364588 PLPPR3Q6T4P5 718 aa19.5■□□□□ 0.71
RNU4-4P-201ENST00000364588 ADRA2BP18089 450 aa18.57■□□□□ 0.56
RNU4-4P-201ENST00000364588 PPP6R1Q9UPN7 881 aa18.57■□□□□ 0.56
RNU4-4P-201ENST00000364588 PIAS4Q8N2W9 510 aaPredicted RBP18.42■□□□□ 0.54
RNU4-4P-201ENST00000364588 MSH5O43196 834 aa18.17■□□□□ 0.5
RNU4-4P-201ENST00000364588 SCAF1Q9H7N4 1312 aaKnown RBP17.16■□□□□ 0.34
RNU4-4P-201ENST00000364588 PPP4R3CPQ6ZMV5 832 aa17.1■□□□□ 0.33
RNU4-4P-201ENST00000364588 MAPK8IP2Q13387 824 aaPredicted RBP16.85■□□□□ 0.29
RNU4-4P-201ENST00000364588 DMRT2Q9Y5R5 561 aa16.79■□□□□ 0.28
RNU4-4P-201ENST00000364588 POTEDQ86YR6 584 aa16.72■□□□□ 0.27
RNU4-4P-201ENST00000364588 NCBP3Q53F19 620 aaKnown RBP16.7■□□□□ 0.26
RNU4-4P-201ENST00000364588 CNKSR2Q8WXI2 1034 aa16.7■□□□□ 0.26
RNU4-4P-201ENST00000364588 KCNA4P22459 653 aa16.5■□□□□ 0.23
RNU4-4P-201ENST00000364588 RNF216Q9NWF9 866 aaPredicted RBP16.41■□□□□ 0.22
RNU4-4P-201ENST00000364588 HOXD11P31277 338 aaPredicted RBP16.37■□□□□ 0.21
RNU4-4P-201ENST00000364588 NPM3O75607 178 aaKnown RBP16.36■□□□□ 0.21
RNU4-4P-201ENST00000364588 DCAF8L1A6NGE4 600 aa16.05■□□□□ 0.16
RNU4-4P-201ENST00000364588 DNAJC5BQ9UF47 199 aa16■□□□□ 0.15
RNU4-4P-201ENST00000364588 SLC4A1APQ9BWU0 796 aaKnown RBP15.74■□□□□ 0.11
RNU4-4P-201ENST00000364588 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.62■□□□□ 0.09
RNU4-4P-201ENST00000364588 RNF39Q9H2S5 420 aa15.49■□□□□ 0.07
RNU4-4P-201ENST00000364588 SLC4A2P04920 1241 aa15.45■□□□□ 0.06
RNU4-4P-201ENST00000364588 C1QBPQ07021 282 aaKnown RBP15.35■□□□□ 0.05
RNU4-4P-201ENST00000364588 FOXD4L1Q9NU39 408 aa15.31■□□□□ 0.04
RNU4-4P-201ENST00000364588 U3KPZ7 1027 aaPredicted RBP15.31■□□□□ 0.04
RNU4-4P-201ENST00000364588 MYCNP04198 464 aaPredicted RBP15.21■□□□□ 0.03
RNU4-4P-201ENST00000364588 CACNB1Q02641 598 aaPredicted RBP15.21■□□□□ 0.03
RNU4-4P-201ENST00000364588 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.2■□□□□ 0.02
RNU4-4P-201ENST00000364588 HNRNPUL2Q1KMD3 747 aaKnown RBP15.2■□□□□ 0.02
RNU4-4P-201ENST00000364588 ZBTB22O15209 634 aa15.14■□□□□ 0.01
RNU4-4P-201ENST00000364588 APLP2Q06481 763 aa15.12■□□□□ 0.01
RNU4-4P-201ENST00000364588 SAMD1Q6SPF0 538 aaPredicted RBP15.11■□□□□ 0.01
RNU4-4P-201ENST00000364588 EHMT2Q96KQ7 1210 aa15.07■□□□□ 0
RNU4-4P-201ENST00000364588 CSRNP3Q8WYN3 585 aa14.93□□□□□ -0.02
RNU4-4P-201ENST00000364588 CAPN15O75808 1086 aa14.9□□□□□ -0.02
RNU4-4P-201ENST00000364588 SPINK5Q9NQ38 1064 aaPredicted RBP14.89□□□□□ -0.03
RNU4-4P-201ENST00000364588 ZNF219Q9P2Y4 722 aaPredicted RBP14.87□□□□□ -0.03
RNU4-4P-201ENST00000364588 ATXN8OSP0DMR3 200 aa14.82□□□□□ -0.04
RNU4-4P-201ENST00000364588 TRHP20396 242 aaPredicted RBP14.77□□□□□ -0.05
RNU4-4P-201ENST00000364588 DSG3P32926 999 aa14.66□□□□□ -0.06
RNU4-4P-201ENST00000364588 ATF5Q9Y2D1 282 aaPredicted RBP14.65□□□□□ -0.06
RNU4-4P-201ENST00000364588 ABCB7O75027 752 aa14.57□□□□□ -0.08
RNU4-4P-201ENST00000364588 POLA2Q14181 598 aa14.48□□□□□ -0.09
RNU4-4P-201ENST00000364588 ZBTB12Q9Y330 459 aaPredicted RBP14.39□□□□□ -0.11
RNU4-4P-201ENST00000364588 FBLN2P98095 1184 aa14.22□□□□□ -0.13
RNU4-4P-201ENST00000364588 RBM42Q9BTD8 480 aaKnown RBP14.11□□□□□ -0.15
RNU4-4P-201ENST00000364588 MKRN4PQ13434 485 aaPredicted RBP14.04□□□□□ -0.16
RNU4-4P-201ENST00000364588 OSCARQ8IYS5 282 aa14.03□□□□□ -0.16
RNU4-4P-201ENST00000364588 SPDYE2BA6NHP3 402 aa13.93□□□□□ -0.18
RNU4-4P-201ENST00000364588 SPDYE6P0CI01 402 aa13.93□□□□□ -0.18
RNU4-4P-201ENST00000364588 SPDYE2Q495Y8 402 aa13.93□□□□□ -0.18
RNU4-4P-201ENST00000364588 AKT1S1Q96B36 256 aa13.83□□□□□ -0.2
RNU4-4P-201ENST00000364588 ZNF692Q9BU19 519 aaPredicted RBP13.79□□□□□ -0.2
RNU4-4P-201ENST00000364588 SSUH2Q9Y2M2 353 aa13.77□□□□□ -0.21
RNU4-4P-201ENST00000364588 SPDYE4A6NLX3 237 aa13.72□□□□□ -0.21
RNU4-4P-201ENST00000364588 REM2Q8IYK8 340 aaPredicted RBP13.64□□□□□ -0.23
RNU4-4P-201ENST00000364588 PABPN1Q86U42 306 aaKnown RBP eCLIP13.59□□□□□ -0.23
RNU4-4P-201ENST00000364588 FKBP8Q14318 412 aa13.56□□□□□ -0.24
RNU4-4P-201ENST00000364588 SPDYE1Q8NFV5 336 aaPredicted RBP13.56□□□□□ -0.24
RNU4-4P-201ENST00000364588 PITPNM1O00562 1244 aa13.51□□□□□ -0.25
RNU4-4P-201ENST00000364588 CHRDL2Q6WN34 429 aa13.5□□□□□ -0.25
RNU4-4P-201ENST00000364588 PROM2Q8N271 834 aa13.48□□□□□ -0.25
RNU4-4P-201ENST00000364588 CLEC11AQ9Y240 323 aa13.44□□□□□ -0.26
RNU4-4P-201ENST00000364588 STAG3Q9UJ98 1225 aa13.43□□□□□ -0.26
RNU4-4P-201ENST00000364588 PRR29P0C7W0 189 aa13.31□□□□□ -0.28
RNU4-4P-201ENST00000364588 FXR2P51116 673 aaKnown RBP eCLIP13.28□□□□□ -0.28
RNU4-4P-201ENST00000364588 PIP4P2Q8N4L2 257 aa13.26□□□□□ -0.29
RNU4-4P-201ENST00000364588 POTEHQ6S545 545 aa13.24□□□□□ -0.29
RNU4-4P-201ENST00000364588 FBXO3Q9UK99 471 aa13.22□□□□□ -0.29
RNU4-4P-201ENST00000364588 PRKAR2AP13861 404 aaKnown RBP13.17□□□□□ -0.3
RNU4-4P-201ENST00000364588 PLEKHG5O94827 1062 aa13.09□□□□□ -0.31
RNU4-4P-201ENST00000364588 CHADLQ6NUI6 762 aa13.08□□□□□ -0.32
RNU4-4P-201ENST00000364588 CREBZFQ9NS37 354 aa13.07□□□□□ -0.32
RNU4-4P-201ENST00000364588 PLCD3Q8N3E9 789 aa13.02□□□□□ -0.33
RNU4-4P-201ENST00000364588 MIER1Q8N108 512 aa13.01□□□□□ -0.33
RNU4-4P-201ENST00000364588 VASPP50552 380 aaPredicted RBP12.99□□□□□ -0.33
RNU4-4P-201ENST00000364588 FARP1Q9Y4F1 1045 aaPredicted RBP12.99□□□□□ -0.33
RNU4-4P-201ENST00000364588 ZBTB47Q9UFB7 747 aaPredicted RBP12.98□□□□□ -0.33
RNU4-4P-201ENST00000364588 NPM1P06748 294 aaKnown RBP eCLIP12.94□□□□□ -0.34
RNU4-4P-201ENST00000364588 MNX1P50219 401 aaPredicted RBP12.9□□□□□ -0.34
RNU4-4P-201ENST00000364588 NISCHQ9Y2I1 1504 aa12.89□□□□□ -0.35
RNU4-4P-201ENST00000364588 HAX1O00165 279 aa12.88□□□□□ -0.35
RNU4-4P-201ENST00000364588 C19orf67A6NJJ6 358 aa12.83□□□□□ -0.36
RNU4-4P-201ENST00000364588 PAK3O75914 559 aaPredicted RBP12.8□□□□□ -0.36
RNU4-4P-201ENST00000364588 CD44P16070 742 aaKnown RBP12.8□□□□□ -0.36
RNU4-4P-201ENST00000364588 KLHL34Q8N239 644 aa12.79□□□□□ -0.36
RNU4-4P-201ENST00000364588 IFNLR1Q8IU57 520 aaPredicted RBP12.72□□□□□ -0.37
RNU4-4P-201ENST00000364588 ZRANB1Q9UGI0 708 aa12.69□□□□□ -0.38
RNU4-4P-201ENST00000364588 NUBP1P53384 320 aa12.68□□□□□ -0.38
RNU4-4P-201ENST00000364588 SP7Q8TDD2 431 aaPredicted RBP12.68□□□□□ -0.38
RNU4-4P-201ENST00000364588 SPOCK2Q92563 424 aa12.68□□□□□ -0.38
RNU4-4P-201ENST00000364588 FAM212AQ96EL1 285 aa12.68□□□□□ -0.38
RNU4-4P-201ENST00000364588 RASEFQ8IZ41 740 aa12.66□□□□□ -0.38
RNU4-4P-201ENST00000364588 ZNF579Q8NAF0 562 aaKnown RBP12.66□□□□□ -0.38
RNU4-4P-201ENST00000364588 EVX2Q03828 476 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms