RNA–Protein interactions for RNA: ENST00000324106.8

CD28-201, Transcript of CD28 molecule, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CD28, Length 4,812 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-201ENST00000324106 DCAF8L2P0C7V8 631 aa15.98■□□□□ 0.15
CD28-201ENST00000324106 NISCHQ9Y2I1 1504 aa15.25■□□□□ 0.03
CD28-201ENST00000324106 SUPT5HO00267 1087 aaKnown RBP14.75□□□□□ -0.05
CD28-201ENST00000324106 FAM9AQ8IZU1 332 aaPredicted RBP14.53□□□□□ -0.08
CD28-201ENST00000324106 SHROOM4Q9ULL8 1493 aa14.49□□□□□ -0.09
CD28-201ENST00000324106 APLP2Q06481 763 aa14.31□□□□□ -0.12
CD28-201ENST00000324106 CCDC180Q9P1Z9 1646 aa14.27□□□□□ -0.12
CD28-201ENST00000324106 EHMT2Q96KQ7 1210 aa14.1□□□□□ -0.15
CD28-201ENST00000324106 TRIM41Q8WV44 630 aa13.81□□□□□ -0.2
CD28-201ENST00000324106 ATP1B4Q9UN42 357 aaPredicted RBP13.78□□□□□ -0.2
CD28-201ENST00000324106 PELP1Q8IZL8 1130 aaKnown RBP13.74□□□□□ -0.21
CD28-201ENST00000324106 RANGAP1P46060 587 aaPredicted RBP13.71□□□□□ -0.21
CD28-201ENST00000324106 UBTFP17480 764 aaKnown RBP13.7□□□□□ -0.22
CD28-201ENST00000324106 TTBK1Q5TCY1 1321 aaPredicted RBP13.58□□□□□ -0.23
CD28-201ENST00000324106 MYT1LQ9UL68 1186 aa13.5□□□□□ -0.25
CD28-201ENST00000324106 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.47□□□□□ -0.25
CD28-201ENST00000324106 HNRNPUL2Q1KMD3 747 aaKnown RBP13.47□□□□□ -0.25
CD28-201ENST00000324106 MYO15BQ96JP2 1530 aa13.45□□□□□ -0.26
CD28-201ENST00000324106 ABCC9O60706 1549 aa13.44□□□□□ -0.26
CD28-201ENST00000324106 PCGF6Q9BYE7 350 aa13.43□□□□□ -0.26
CD28-201ENST00000324106 ZEB1P37275 1124 aaPredicted RBP13.37□□□□□ -0.27
CD28-201ENST00000324106 CCER1Q8TC90 406 aaPredicted RBP13.35□□□□□ -0.27
CD28-201ENST00000324106 PABPN1Q86U42 306 aaKnown RBP eCLIP13.31□□□□□ -0.28
CD28-201ENST00000324106 NACADO15069 1562 aa13.16□□□□□ -0.3
CD28-201ENST00000324106 CENPBP07199 599 aaPredicted RBP13.15□□□□□ -0.3
CD28-201ENST00000324106 DCAF1Q9Y4B6 1507 aa13.13□□□□□ -0.31
CD28-201ENST00000324106 ITGAEP38570 1179 aa13.09□□□□□ -0.31
CD28-201ENST00000324106 RB1CC1Q8TDY2 1594 aa13.09□□□□□ -0.31
CD28-201ENST00000324106 FBLN2P98095 1184 aa13.07□□□□□ -0.32
CD28-201ENST00000324106 NEFLP07196 543 aa13.06□□□□□ -0.32
CD28-201ENST00000324106 CHIC1Q5VXU3 224 aa13.01□□□□□ -0.33
CD28-201ENST00000324106 ERICH6Q7L0X2 663 aa12.97□□□□□ -0.33
CD28-201ENST00000324106 POLR3GLQ9BT43 218 aa12.97□□□□□ -0.33
CD28-201ENST00000324106 PPARGC1BQ86YN6 1023 aaKnown RBP12.97□□□□□ -0.33
CD28-201ENST00000324106 TRIM26Q12899 539 aaPredicted RBP12.96□□□□□ -0.34
CD28-201ENST00000324106 SLC4A1APQ9BWU0 796 aaKnown RBP12.92□□□□□ -0.34
CD28-201ENST00000324106 FAM50AQ14320 339 aaKnown RBP12.88□□□□□ -0.35
CD28-201ENST00000324106 NPM1P06748 294 aaKnown RBP eCLIP12.87□□□□□ -0.35
CD28-201ENST00000324106 CDK11AQ9UQ88 783 aaPredicted RBP12.86□□□□□ -0.35
CD28-201ENST00000324106 TRIM52Q96A61 297 aa12.85□□□□□ -0.35
CD28-201ENST00000324106 ESF1Q9H501 851 aaKnown RBP12.83□□□□□ -0.36
CD28-201ENST00000324106 UNC13AQ9UPW8 1703 aa12.81□□□□□ -0.36
CD28-201ENST00000324106 LOC105371045A0A1W2PR82 267 aa12.79□□□□□ -0.36
CD28-201ENST00000324106 SCRIBQ14160 1630 aa12.74□□□□□ -0.37
CD28-201ENST00000324106 BCANQ96GW7 911 aa12.74□□□□□ -0.37
CD28-201ENST00000324106 YTHDC1Q96MU7 727 aaKnown RBP12.71□□□□□ -0.38
CD28-201ENST00000324106 CSRNP3Q8WYN3 585 aa12.7□□□□□ -0.38
CD28-201ENST00000324106 DAXXQ9UER7 740 aaPredicted RBP12.7□□□□□ -0.38
CD28-201ENST00000324106 CNGB1Q14028 1251 aaPredicted RBP12.67□□□□□ -0.38
CD28-201ENST00000324106 P3H3Q8IVL6 736 aa12.63□□□□□ -0.39
CD28-201ENST00000324106 NEFMP07197 916 aa12.62□□□□□ -0.39
CD28-201ENST00000324106 ZNF777Q9ULD5 760 aaPredicted RBP12.62□□□□□ -0.39
CD28-201ENST00000324106 STAG3Q9UJ98 1225 aa12.61□□□□□ -0.39
CD28-201ENST00000324106 ZNF326Q5BKZ1 582 aaKnown RBP12.6□□□□□ -0.39
CD28-201ENST00000324106 ARID3CA6NKF2 412 aa12.6□□□□□ -0.39
CD28-201ENST00000324106 CHMP7Q8WUX9 453 aaPredicted RBP12.59□□□□□ -0.39
CD28-201ENST00000324106 ZCCHC6Q5VYS8 1495 aaKnown RBP12.58□□□□□ -0.4
CD28-201ENST00000324106 NEUROD1Q13562 356 aa12.57□□□□□ -0.4
CD28-201ENST00000324106 BICRAQ9NZM4 1560 aa12.55□□□□□ -0.4
CD28-201ENST00000324106 HRCP23327 699 aa12.54□□□□□ -0.4
CD28-201ENST00000324106 ZBTB47Q9UFB7 747 aaPredicted RBP12.53□□□□□ -0.4
CD28-201ENST00000324106 CLSPNQ9HAW4 1339 aa12.52□□□□□ -0.41
CD28-201ENST00000324106 CHGAP10645 457 aaKnown RBP12.48□□□□□ -0.41
CD28-201ENST00000324106 SLC24A1O60721 1099 aa12.48□□□□□ -0.41
CD28-201ENST00000324106 TSPY4P0CV99 314 aa12.47□□□□□ -0.41
CD28-201ENST00000324106 TSPY10P0CW01 314 aa12.47□□□□□ -0.41
CD28-201ENST00000324106 PLPPR3Q6T4P5 718 aa12.44□□□□□ -0.42
CD28-201ENST00000324106 ANP32CO43423 234 aa12.43□□□□□ -0.42
CD28-201ENST00000324106 ERCC6Q03468 1493 aa12.38□□□□□ -0.43
CD28-201ENST00000324106 PLEKHD1A6NEE1 506 aa12.36□□□□□ -0.43
CD28-201ENST00000324106 MTUS2Q5JR59 1369 aa12.35□□□□□ -0.43
CD28-201ENST00000324106 CANXP27824 592 aaKnown RBP12.34□□□□□ -0.43
CD28-201ENST00000324106 ACIN1Q9UKV3 1341 aaKnown RBP12.34□□□□□ -0.43
CD28-201ENST00000324106 ZNF316A6NFI3 1004 aaPredicted RBP12.34□□□□□ -0.43
CD28-201ENST00000324106 DIEXFQ68CQ4 756 aaKnown RBP12.34□□□□□ -0.43
CD28-201ENST00000324106 BAZ1BQ9UIG0 1483 aaKnown RBP12.33□□□□□ -0.44
CD28-201ENST00000324106 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.32□□□□□ -0.44
CD28-201ENST00000324106 TONSLQ96HA7 1378 aa12.3□□□□□ -0.44
CD28-201ENST00000324106 KCNH8Q96L42 1107 aa12.28□□□□□ -0.44
CD28-201ENST00000324106 PPP1R15AO75807 674 aaPredicted RBP12.28□□□□□ -0.44
CD28-201ENST00000324106 ARID4BQ4LE39 1312 aaPredicted RBP12.27□□□□□ -0.44
CD28-201ENST00000324106 RSF1Q96T23 1441 aaPredicted RBP12.27□□□□□ -0.45
CD28-201ENST00000324106 EEA1Q15075 1411 aa12.25□□□□□ -0.45
CD28-201ENST00000324106 NPM2Q86SE8 214 aaKnown RBP12.23□□□□□ -0.45
CD28-201ENST00000324106 C14orf37Q86TY3 774 aa12.23□□□□□ -0.45
CD28-201ENST00000324106 CHIC2Q9UKJ5 165 aa12.23□□□□□ -0.45
CD28-201ENST00000324106 KIF27Q86VH2 1401 aa12.21□□□□□ -0.45
CD28-201ENST00000324106 SCAF1Q9H7N4 1312 aaKnown RBP12.2□□□□□ -0.46
CD28-201ENST00000324106 TRHP20396 242 aaPredicted RBP12.2□□□□□ -0.46
CD28-201ENST00000324106 SMARCA2P51531 1590 aa12.18□□□□□ -0.46
CD28-201ENST00000324106 WRNQ14191 1432 aaPredicted RBP eCLIP12.17□□□□□ -0.46
CD28-201ENST00000324106 RTL5Q5HYW3 569 aaPredicted RBP12.17□□□□□ -0.46
CD28-201ENST00000324106 PEG3Q9GZU2 1588 aa12.17□□□□□ -0.46
CD28-201ENST00000324106 CFDP1Q9UEE9 299 aaPredicted RBP12.16□□□□□ -0.46
CD28-201ENST00000324106 CLIP1P30622 1438 aa12.16□□□□□ -0.46
CD28-201ENST00000324106 HAP1P54257 671 aaPredicted RBP12.14□□□□□ -0.47
CD28-201ENST00000324106 EIF4G1Q04637 1599 aaKnown RBP12.14□□□□□ -0.47
CD28-201ENST00000324106 BAZ1AQ9NRL2 1556 aaPredicted RBP12.13□□□□□ -0.47
CD28-201ENST00000324106 PDS5BQ9NTI5 1447 aa12.12□□□□□ -0.47
CD28-201ENST00000324106 BCL11AQ9H165 835 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms