Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 GAPDHP75-201ENST00000433910 943 ntBASIC8.73□□□□□ -1.01
MSH6P52701 CDK7P1-201ENST00000434574 693 ntBASIC8.73□□□□□ -1.01
MSH6P52701 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC8.73□□□□□ -1.01
MSH6P52701 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC8.73□□□□□ -1.01
MSH6P52701 AC090616.1-201ENST00000583895 447 ntBASIC8.73□□□□□ -1.01
MSH6P52701 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC8.73□□□□□ -1.01
MSH6P52701 CCL14-204ENST00000622526 472 ntTSL 3 BASIC8.73□□□□□ -1.01
MSH6P52701 CASC19-222ENST00000641321 1173 ntBASIC8.73□□□□□ -1.01
MSH6P52701 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
MSH6P52701 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC8.73□□□□□ -1.01
MSH6P52701 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC8.73□□□□□ -1.01
MSH6P52701 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
MSH6P52701 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
MSH6P52701 WDR95P-201ENST00000425638 1542 ntBASIC8.73□□□□□ -1.01
MSH6P52701 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
MSH6P52701 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
MSH6P52701 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
MSH6P52701 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC8.73□□□□□ -1.01
MSH6P52701 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC8.73□□□□□ -1.01
MSH6P52701 AL136528.1-201ENST00000443034 754 ntTSL 3 BASIC8.73□□□□□ -1.01
MSH6P52701 FTLP8-201ENST00000446770 267 ntBASIC8.73□□□□□ -1.01
MSH6P52701 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC8.73□□□□□ -1.01
MSH6P52701 COPS8P2-201ENST00000473228 627 ntBASIC8.73□□□□□ -1.01
MSH6P52701 RN7SL826P-201ENST00000479724 288 ntBASIC8.73□□□□□ -1.01
MSH6P52701 RPL23AP68-201ENST00000480924 445 ntBASIC8.73□□□□□ -1.01
MSH6P52701 OR5M14P-201ENST00000506803 618 ntBASIC8.73□□□□□ -1.01
MSH6P52701 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC8.73□□□□□ -1.01
MSH6P52701 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC8.73□□□□□ -1.01
MSH6P52701 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC8.73□□□□□ -1.01
MSH6P52701 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC8.73□□□□□ -1.01
MSH6P52701 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC8.73□□□□□ -1.01
MSH6P52701 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
MSH6P52701 AC025171.4-201ENST00000607250 1047 ntBASIC8.73□□□□□ -1.01
MSH6P52701 AC131009.3-201ENST00000621809 287 ntBASIC8.73□□□□□ -1.01
MSH6P52701 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC8.73□□□□□ -1.01
MSH6P52701 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
MSH6P52701 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC8.72□□□□□ -1.01
MSH6P52701 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC8.72□□□□□ -1.01
MSH6P52701 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC8.72□□□□□ -1.01
MSH6P52701 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
MSH6P52701 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC8.72□□□□□ -1.01
MSH6P52701 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
MSH6P52701 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC8.72□□□□□ -1.01
MSH6P52701 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC8.72□□□□□ -1.01
MSH6P52701 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC8.72□□□□□ -1.01
MSH6P52701 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC8.72□□□□□ -1.01
MSH6P52701 CRNKL1-207ENST00000536226 4009 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
MSH6P52701 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
MSH6P52701 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
MSH6P52701 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC8.72□□□□□ -1.01
MSH6P52701 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC8.72□□□□□ -1.01
MSH6P52701 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC8.72□□□□□ -1.01
MSH6P52701 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
MSH6P52701 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC8.72□□□□□ -1.01
MSH6P52701 EIF4A1P6-201ENST00000448133 1210 ntBASIC8.72□□□□□ -1.01
MSH6P52701 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC8.72□□□□□ -1.01
MSH6P52701 NDUFB5P1-201ENST00000508134 564 ntBASIC8.72□□□□□ -1.01
MSH6P52701 SNORA70.20-201ENST00000516848 126 ntBASIC8.72□□□□□ -1.01
MSH6P52701 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC8.72□□□□□ -1.01
MSH6P52701 AC021269.1-201ENST00000526860 705 ntBASIC8.72□□□□□ -1.01
MSH6P52701 AP001858.2-201ENST00000536213 601 ntBASIC8.72□□□□□ -1.01
MSH6P52701 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC8.72□□□□□ -1.01
MSH6P52701 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC8.72□□□□□ -1.01
MSH6P52701 AC116651.1-201ENST00000609724 556 ntBASIC8.72□□□□□ -1.01
MSH6P52701 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
MSH6P52701 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC8.72□□□□□ -1.01
MSH6P52701 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC8.72□□□□□ -1.01
MSH6P52701 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
MSH6P52701 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC8.71□□□□□ -1.01
MSH6P52701 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
MSH6P52701 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC8.71□□□□□ -1.01
MSH6P52701 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC8.71□□□□□ -1.01
MSH6P52701 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.01
MSH6P52701 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
MSH6P52701 NXF2B-202ENST00000602195 2322 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
MSH6P52701 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC8.71□□□□□ -1.02
MSH6P52701 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
MSH6P52701 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC8.71□□□□□ -1.02
MSH6P52701 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
MSH6P52701 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC8.71□□□□□ -1.02
MSH6P52701 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC8.71□□□□□ -1.02
MSH6P52701 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
MSH6P52701 PARN-201ENST00000341484 2100 ntTSL 2 BASIC8.71□□□□□ -1.02
MSH6P52701 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC8.71□□□□□ -1.02
MSH6P52701 OR7E101P-201ENST00000400428 513 ntBASIC8.71□□□□□ -1.02
MSH6P52701 AC245884.2-201ENST00000426257 404 ntBASIC8.71□□□□□ -1.02
MSH6P52701 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC8.71□□□□□ -1.02
MSH6P52701 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC8.71□□□□□ -1.02
MSH6P52701 AL122020.1-201ENST00000472287 459 ntBASIC8.71□□□□□ -1.02
MSH6P52701 SIAH1P1-201ENST00000479411 923 ntBASIC8.71□□□□□ -1.02
MSH6P52701 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
MSH6P52701 WBP1LP3-201ENST00000523033 208 ntBASIC8.71□□□□□ -1.02
MSH6P52701 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC8.71□□□□□ -1.02
MSH6P52701 OR9L1P-201ENST00000529493 933 ntBASIC8.71□□□□□ -1.02
MSH6P52701 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC8.71□□□□□ -1.02
MSH6P52701 AC022106.1-201ENST00000612834 766 ntBASIC8.71□□□□□ -1.02
MSH6P52701 AC037198.3-201ENST00000616754 526 ntBASIC8.71□□□□□ -1.02
MSH6P52701 AL691477.1-201ENST00000624398 162 ntBASIC8.71□□□□□ -1.02
MSH6P52701 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC8.71□□□□□ -1.02
MSH6P52701 AC004808.2-201ENST00000627965 773 ntBASIC8.71□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms