Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 TNPO3-204ENST00000482320 3585 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
RFX1P22670 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
RFX1P22670 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC8.34□□□□□ -1.07
RFX1P22670 CYFIP2-210ENST00000522463 3477 ntTSL 2 BASIC8.34□□□□□ -1.07
RFX1P22670 CASP12-201ENST00000375726 1306 ntAPPRIS P5 TSL 1 (best) BASIC8.34□□□□□ -1.07
RFX1P22670 PSMC1P7-201ENST00000495689 1315 ntBASIC8.34□□□□□ -1.07
RFX1P22670 TTC39DP-201ENST00000416781 1688 ntBASIC8.34□□□□□ -1.07
RFX1P22670 LINC00208-201ENST00000304233 2150 ntTSL 2 BASIC8.34□□□□□ -1.07
RFX1P22670 OR10W1-201ENST00000395079 1469 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
RFX1P22670 LINC01630-208ENST00000635680 4363 ntTSL 5 BASIC8.34□□□□□ -1.07
RFX1P22670 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC8.34□□□□□ -1.07
RFX1P22670 TRPS1-208ENST00000519076 3329 ntTSL 5 BASIC8.34□□□□□ -1.07
RFX1P22670 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
RFX1P22670 RNA5SP463-201ENST00000363030 120 ntBASIC8.34□□□□□ -1.07
RFX1P22670 Y_RNA.192-201ENST00000363977 102 ntBASIC8.34□□□□□ -1.07
RFX1P22670 NCR2-201ENST00000373083 1154 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.07
RFX1P22670 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC8.34□□□□□ -1.07
RFX1P22670 HMSD-201ENST00000408945 2101 ntAPPRIS P1 TSL 3 BASIC8.34□□□□□ -1.07
RFX1P22670 AL390774.1-201ENST00000411924 246 ntBASIC8.34□□□□□ -1.07
RFX1P22670 AP001043.1-203ENST00000415824 407 ntTSL 5 BASIC8.34□□□□□ -1.07
RFX1P22670 PGAM1P3-201ENST00000420790 565 ntBASIC8.34□□□□□ -1.07
RFX1P22670 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC8.34□□□□□ -1.07
RFX1P22670 AC244035.1-201ENST00000430042 390 ntBASIC8.34□□□□□ -1.07
RFX1P22670 KCTD9P1-201ENST00000430462 1167 ntBASIC8.34□□□□□ -1.07
RFX1P22670 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC8.34□□□□□ -1.07
RFX1P22670 MIR4435-2HG-211ENST00000443467 826 ntTSL 3 BASIC8.34□□□□□ -1.07
RFX1P22670 AL161454.1-201ENST00000446226 569 ntBASIC8.34□□□□□ -1.07
RFX1P22670 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC8.34□□□□□ -1.07
RFX1P22670 RPL36AP55-201ENST00000454114 305 ntBASIC8.34□□□□□ -1.07
RFX1P22670 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC8.34□□□□□ -1.07
RFX1P22670 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC8.34□□□□□ -1.07
RFX1P22670 AC084024.2-201ENST00000503480 791 ntBASIC8.34□□□□□ -1.07
RFX1P22670 AC116353.3-201ENST00000511215 249 ntBASIC8.34□□□□□ -1.07
RFX1P22670 DKK2-204ENST00000513208 925 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
RFX1P22670 NPM1P21-201ENST00000513394 762 ntBASIC8.34□□□□□ -1.07
RFX1P22670 IGHVIII-11-1-201ENST00000522733 267 ntBASIC8.34□□□□□ -1.07
RFX1P22670 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC8.34□□□□□ -1.07
RFX1P22670 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC8.34□□□□□ -1.07
RFX1P22670 AC092133.1-201ENST00000565828 719 ntBASIC8.34□□□□□ -1.07
RFX1P22670 EIF4A2P1-201ENST00000587313 1063 ntBASIC8.34□□□□□ -1.07
RFX1P22670 AC068790.7-201ENST00000602347 528 ntBASIC8.34□□□□□ -1.07
RFX1P22670 AC016394.1-201ENST00000608444 833 ntBASIC8.34□□□□□ -1.07
RFX1P22670 LINC00635-221ENST00000609366 784 ntTSL 5 BASIC8.34□□□□□ -1.07
RFX1P22670 AP000254.1-201ENST00000609934 520 ntBASIC8.34□□□□□ -1.07
RFX1P22670 AC073114.1-201ENST00000612027 490 ntBASIC8.34□□□□□ -1.07
RFX1P22670 MIR6883-201ENST00000614952 78 ntBASIC8.34□□□□□ -1.07
RFX1P22670 AL109954.1-201ENST00000619495 557 ntTSL 4 BASIC8.34□□□□□ -1.07
RFX1P22670 AL035661.1-201ENST00000620459 1144 ntBASIC8.34□□□□□ -1.07
RFX1P22670 AC103564.3-201ENST00000621194 220 ntBASIC8.34□□□□□ -1.07
RFX1P22670 AC087893.2-201ENST00000623272 255 ntBASIC8.34□□□□□ -1.07
RFX1P22670 AP003072.4-201ENST00000624580 310 ntBASIC8.34□□□□□ -1.07
RFX1P22670 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC8.34□□□□□ -1.07
RFX1P22670 AC006927.3-201ENST00000638789 384 ntBASIC8.34□□□□□ -1.07
RFX1P22670 TM4SF1-201ENST00000305366 1771 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
RFX1P22670 LINC00299-201ENST00000430192 1760 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
RFX1P22670 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
RFX1P22670 AL137918.1-201ENST00000624542 1922 ntBASIC8.34□□□□□ -1.07
RFX1P22670 CLDN12-201ENST00000287916 3565 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
RFX1P22670 SEL1L3-201ENST00000264868 4369 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
RFX1P22670 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
RFX1P22670 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
RFX1P22670 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC8.34□□□□□ -1.07
RFX1P22670 MTND4P34-201ENST00000572715 1371 ntBASIC8.34□□□□□ -1.07
RFX1P22670 ADH6-203ENST00000394899 2802 ntAPPRIS ALT1 TSL 2 BASIC8.34□□□□□ -1.07
RFX1P22670 PIAS1-201ENST00000249636 8115 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.08
RFX1P22670 MAPK10-313ENST00000641405 2469 ntBASIC8.34□□□□□ -1.08
RFX1P22670 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
RFX1P22670 MTND5P29-201ENST00000458676 1807 ntBASIC8.33□□□□□ -1.08
RFX1P22670 THAP12P7-201ENST00000520248 2290 ntBASIC8.33□□□□□ -1.08
RFX1P22670 LRRC2-AS1-201ENST00000599511 2291 ntBASIC8.33□□□□□ -1.08
RFX1P22670 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
RFX1P22670 CEACAM20-205ENST00000620096 1494 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
RFX1P22670 CORIN-207ENST00000505909 3018 ntTSL 5 BASIC8.33□□□□□ -1.08
RFX1P22670 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC8.33□□□□□ -1.08
RFX1P22670 IL1B-201ENST00000263341 1631 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
RFX1P22670 ARMCX3-207ENST00000537169 3318 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
RFX1P22670 HNRNPC-211ENST00000554455 1784 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
RFX1P22670 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC8.33□□□□□ -1.08
RFX1P22670 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
RFX1P22670 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
RFX1P22670 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
RFX1P22670 FAM3C2-201ENST00000312214 681 ntBASIC8.33□□□□□ -1.08
RFX1P22670 HNRNPCL4-201ENST00000323770 882 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
RFX1P22670 CCDC30-202ENST00000342022 3098 ntAPPRIS P2 TSL 5 BASIC8.33□□□□□ -1.08
RFX1P22670 HNRNPA2B1-201ENST00000354667 3664 ntAPPRIS ALT1 TSL 1 (best) BASIC8.33□□□□□ -1.08
RFX1P22670 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC8.33□□□□□ -1.08
RFX1P22670 MAP2-203ENST00000361559 2038 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
RFX1P22670 RNA5SP218-201ENST00000363188 109 ntBASIC8.33□□□□□ -1.08
RFX1P22670 SNORA10-201ENST00000384084 133 ntBASIC8.33□□□□□ -1.08
RFX1P22670 MIR27A-201ENST00000385073 78 ntBASIC8.33□□□□□ -1.08
RFX1P22670 A2ML1-AS2-201ENST00000394240 386 ntTSL 5 BASIC8.33□□□□□ -1.08
RFX1P22670 RPSAP72-201ENST00000407020 358 ntBASIC8.33□□□□□ -1.08
RFX1P22670 ATP5BP1-201ENST00000411980 1574 ntBASIC8.33□□□□□ -1.08
RFX1P22670 OR10U1P-201ENST00000414690 905 ntBASIC8.33□□□□□ -1.08
RFX1P22670 AC020983.1-201ENST00000417063 543 ntBASIC8.33□□□□□ -1.08
RFX1P22670 AC011753.4-201ENST00000417974 311 ntBASIC8.33□□□□□ -1.08
RFX1P22670 AL358942.1-201ENST00000418595 1178 ntBASIC8.33□□□□□ -1.08
RFX1P22670 AC064875.1-203ENST00000422996 582 ntTSL 4 BASIC8.33□□□□□ -1.08
RFX1P22670 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC8.33□□□□□ -1.08
RFX1P22670 AL138479.1-201ENST00000426913 484 ntBASIC8.33□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms