Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CLEC4M-204ENST00000359059 1733 ntAPPRIS ALT2 TSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 AC016582.1-201ENST00000592640 1716 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 HUWE1-202ENST00000262854 14739 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 CAGE1-202ENST00000338150 2771 ntAPPRIS ALT2 TSL 2 BASIC8.74□□□□□ -1.01
COL9A1P20849 ENTPD1-203ENST00000371207 1903 ntTSL 2 BASIC8.74□□□□□ -1.01
COL9A1P20849 SAG-201ENST00000409110 1591 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 AP000446.1-201ENST00000530045 2643 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 GFOD1-202ENST00000379284 8061 ntTSL 2 BASIC8.74□□□□□ -1.01
COL9A1P20849 DEPDC5-205ENST00000400248 5307 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 CYP4A11-204ENST00000462347 1775 ntTSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 BUB1-212ENST00000535254 3576 ntTSL 2 BASIC8.74□□□□□ -1.01
COL9A1P20849 UTRN-203ENST00000367526 3220 ntTSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 ADH4-201ENST00000265512 1993 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 AL033381.1-201ENST00000314040 3435 ntTSL 2 BASIC8.74□□□□□ -1.01
COL9A1P20849 NUDT5-207ENST00000491614 3433 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 CASP4-203ENST00000444739 2158 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 ANKS1B-201ENST00000329257 996 ntTSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 CLLU1OS-201ENST00000378487 686 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 CFAP61-207ENST00000389656 776 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC8.74□□□□□ -1.01
COL9A1P20849 BX295541.1-201ENST00000417774 250 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 LINCMD1-201ENST00000418518 462 ntTSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 AC118470.1-201ENST00000419891 453 ntAPPRIS P1 TSL 3 BASIC8.74□□□□□ -1.01
COL9A1P20849 BX890604.2-201ENST00000427883 474 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 LINC00385-201ENST00000435044 374 ntTSL 3 BASIC8.74□□□□□ -1.01
COL9A1P20849 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 RPL7P12-201ENST00000446719 750 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 AL157827.1-201ENST00000447622 132 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 RGS5-217ENST00000451759 835 ntTSL 3 BASIC8.74□□□□□ -1.01
COL9A1P20849 AL163540.1-201ENST00000485382 386 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 GNGT2-205ENST00000511673 500 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 LINC02021-203ENST00000514145 569 ntTSL 4 BASIC8.74□□□□□ -1.01
COL9A1P20849 RNU7-30P-201ENST00000516835 62 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 RAD21-204ENST00000518055 896 ntTSL 2 BASIC8.74□□□□□ -1.01
COL9A1P20849 KCTD9P6-201ENST00000522306 950 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 IGJP1-201ENST00000522682 475 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 EIF4A1P4-201ENST00000550578 1213 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 WDR61-205ENST00000558459 884 ntTSL 3 BASIC8.74□□□□□ -1.01
COL9A1P20849 AC136618.2-201ENST00000575091 400 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 AC138207.8-204ENST00000579588 527 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 MIR3682-201ENST00000581338 84 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 AL669831.4-202ENST00000590817 238 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC8.74□□□□□ -1.01
COL9A1P20849 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 AC008638.3-201ENST00000603341 463 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 NQO2-209ENST00000606474 470 ntTSL 3 BASIC8.74□□□□□ -1.01
COL9A1P20849 AL590705.1-201ENST00000607322 484 ntTSL 4 BASIC8.74□□□□□ -1.01
COL9A1P20849 AC090948.1-201ENST00000607464 549 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 RMST_3.1-201ENST00000611651 109 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC8.74□□□□□ -1.01
COL9A1P20849 ZNHIT3-204ENST00000617429 951 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 RN7SL113P-201ENST00000619959 299 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 METAP1-212ENST00000625963 147 ntTSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 LINC00466-206ENST00000634576 1279 ntTSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 PRPS1L1-202ENST00000638645 957 ntAPPRIS P2 BASIC8.74□□□□□ -1.01
COL9A1P20849 AC092329.4-205ENST00000638822 574 ntTSL 3 BASIC8.74□□□□□ -1.01
COL9A1P20849 MINDY3-201ENST00000277632 2381 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 PKD1-201ENST00000262304 14138 ntAPPRIS P3 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 PKD1-203ENST00000423118 14135 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 AC010200.1-201ENST00000547380 1454 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 AC048380.2-201ENST00000624725 3548 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 AL008638.6-201ENST00000623947 4254 ntBASIC8.74□□□□□ -1.01
COL9A1P20849 PHACTR2-AS1-201ENST00000450575 1699 ntTSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 PIK3R1-202ENST00000336483 2439 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 SVIL-203ENST00000375400 6729 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 AC104066.2-201ENST00000564513 1741 ntTSL 3 BASIC8.74□□□□□ -1.01
COL9A1P20849 AL513548.3-201ENST00000611708 2865 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 GLRA3-202ENST00000340217 3065 ntAPPRIS ALT1 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 ARL6IP5-201ENST00000273258 2101 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 CEACAM8-201ENST00000244336 2305 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 AC016205.1-201ENST00000591629 2306 ntTSL 2 BASIC8.74□□□□□ -1.01
COL9A1P20849 AEBP2-202ENST00000360995 2533 ntAPPRIS ALT2 TSL 2 BASIC8.74□□□□□ -1.01
COL9A1P20849 DCTN1-226ENST00000628224 4485 ntTSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 MSH5-205ENST00000395853 2704 ntTSL 2 BASIC8.74□□□□□ -1.01
COL9A1P20849 RPP14-201ENST00000295959 3121 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 LRRC8D-202ENST00000394593 3345 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
COL9A1P20849 AP000552.1-202ENST00000436681 3714 ntTSL 5 BASIC8.74□□□□□ -1.01
COL9A1P20849 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
COL9A1P20849 DTNA-221ENST00000591182 1787 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
COL9A1P20849 TULP3-201ENST00000397132 1951 ntAPPRIS ALT2 TSL 5 BASIC8.73□□□□□ -1.01
COL9A1P20849 CDKL5-209ENST00000635828 3823 ntTSL 5 BASIC8.73□□□□□ -1.01
COL9A1P20849 AL031985.3-201ENST00000565390 2449 ntBASIC8.73□□□□□ -1.01
COL9A1P20849 RNPC3-202ENST00000524631 2013 ntAPPRIS ALT1 TSL 2 BASIC8.73□□□□□ -1.01
COL9A1P20849 FBN2-208ENST00000619499 10154 ntTSL 5 BASIC8.73□□□□□ -1.01
COL9A1P20849 DHX40-201ENST00000251241 3660 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
COL9A1P20849 RBBP8-205ENST00000399725 3260 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
COL9A1P20849 XRCC2-201ENST00000359321 3067 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
COL9A1P20849 GAB3-202ENST00000369575 4718 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
COL9A1P20849 MAK-205ENST00000538030 2459 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
COL9A1P20849 PAN2-203ENST00000440411 4576 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
COL9A1P20849 HEPACAM2-204ENST00000453812 1869 ntAPPRIS ALT2 TSL 2 BASIC8.73□□□□□ -1.01
COL9A1P20849 USP17L21-202ENST00000621388 1677 ntAPPRIS ALT2 TSL 5 BASIC8.73□□□□□ -1.01
COL9A1P20849 ARID1B-232ENST00000637904 5913 ntAPPRIS ALT2 TSL 5 BASIC8.73□□□□□ -1.01
COL9A1P20849 SCMH1-208ENST00000397171 3186 ntTSL 5 BASIC8.73□□□□□ -1.01
COL9A1P20849 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms